View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16724_high_4 (Length: 466)

Name: NF16724_high_4
Description: NF16724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16724_high_4
NF16724_high_4
[»] chr2 (1 HSPs)
chr2 (1-463)||(43743753-43744215)
[»] chr4 (2 HSPs)
chr4 (6-135)||(11334323-11334452)
chr4 (18-73)||(198216-198271)
[»] chr6 (1 HSPs)
chr6 (1-76)||(32079080-32079153)
[»] chr3 (1 HSPs)
chr3 (90-137)||(50687748-50687795)
[»] chr7 (1 HSPs)
chr7 (91-141)||(23283883-23283933)
[»] scaffold0229 (1 HSPs)
scaffold0229 (90-137)||(15273-15320)
[»] chr1 (3 HSPs)
chr1 (90-137)||(1403039-1403086)
chr1 (90-137)||(43350967-43351014)
chr1 (18-72)||(1741776-1741830)
[»] chr8 (1 HSPs)
chr8 (90-136)||(35237259-35237305)
[»] chr5 (3 HSPs)
chr5 (90-136)||(39149471-39149517)
chr5 (25-62)||(14615963-14616000)
chr5 (6-73)||(2458269-2458339)


Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 43743753 - 43744215
Alignment:
Q  1 cactaagaggttgatgaagaaagaatatacagtgtagacaacctatagtaagatcagtgttcccttttaatctgattgttnnnnnnnngtttcccatgtt 100  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||| |||        |||||||||| |    
T  43743753 cactaagagcttgatgaagaaagaatatacattgtagacaacctatagtaagatcaatgttccctttaaatctgatggttaaaaaaaagtttcccatggt 43743852  T
Q  101 gggaaagaattcaccttttccatgtgaaatgtcacctgtaagtttgtcaattgttgtactttgcttagagctggggagctacttatataggcaagtaaga 200  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43743853 gggaaaggattcacctttcccatgtgaaatgtcacctgtaagtttgtcaattgttgtactttgcttagagctggggggctacttatataggcaagtaaga 43743952  T
Q  201 tttggctgttgcaacatgtatcgccttgatgttgtaagtgatcgcagtgttgtaactttcatgaatatttgagttgttgaaaagacttgtgctactaccc 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43743953 tttggctgttgcaacatgtatccccttgatgttgtaagtgatcgcagtgttgtaactttcatgaatatttgagttgttgaaaagacttgtgctactaccc 43744052  T
Q  301 ttgcgatggccatgtcttcattcaagtttctctcaggaaatgagagtgtaactttatgtaatgtattttgcataaaggggaggaggagggtaatatatat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43744053 ttgcgatggccatgtcttcattcaagtttctctcaggaaatgagagtgtaattttatgtaatgtattttgcataaaggggaggaggaggataatatatat 43744152  T
Q  401 tgacataagagggggagggtaatgtaatttaaacatctaatagtagagaaaagtataatttac 463  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  43744153 tgacataagagggggagggtaatgtaattcaaacatctaatagtagagaaaagtgtaatttac 43744215  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 11334452 - 11334323
Alignment:
Q  6 agaggttgatgaagaaagaatatacagtgtagacaacctatagtaagatcagtgttcccttttaatctgattgttnnnnnnnngtttcccatgttgggaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||        |||||||||  ||||||    
T  11334452 agaggttgatgaagaaagaatatacagtgtagacaacctatagtaagattagtgttcccttttaatctaatggttaaaaaaaagtttcccatagtgggaa 11334353  T
Q  106 agaattcaccttttccatgtgaaatgtcac 135  Q
    || |||||||||| | || |||||||||||    
T  11334352 aggattcacctttcctatatgaaatgtcac 11334323  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 198271 - 198216
Alignment:
Q  18 agaaagaatatacagtgtagacaacctatagtaagatcagtgttcccttttaatct 73  Q
    ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  198271 agaaaaaatatacagtgtagacaacctataataagatcagtattcccttttaatct 198216  T

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Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 32079153 - 32079080
Alignment:
Q  1 cactaagaggttgatgaagaaagaatatacagtgtagacaacctatagtaagatcagtgttcccttttaatctgat 76  Q
    ||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  32079153 cactaagaggttgatgaagaaagaatatacaatgta--caacctatagtaagatcagtgttcccttttaatctgat 32079080  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 50687748 - 50687795
Alignment:
Q  90 tttcccatgttgggaaagaattcaccttttccatgtgaaatgtcacct 137  Q
    ||||||||| |||||||||||| |||||| ||||||||||||||||||    
T  50687748 tttcccatggtgggaaagaattaacctttcccatgtgaaatgtcacct 50687795  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 23283883 - 23283933
Alignment:
Q  91 ttcccatgttgggaaagaattcaccttttccatgtgaaatgtcacctgtaa 141  Q
    |||||||| |||||||| |||| ||||| ||||||||||||||||||||||    
T  23283883 ttcccatggtgggaaaggattcccctttcccatgtgaaatgtcacctgtaa 23283933  T

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Target: scaffold0229 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 15273 - 15320
Alignment:
Q  90 tttcccatgttgggaaagaattcaccttttccatgtgaaatgtcacct 137  Q
    ||||||||| |||||||| ||| ||||||||||||||||||| |||||    
T  15273 tttcccatggtgggaaaggattaaccttttccatgtgaaatgccacct 15320  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 1403086 - 1403039
Alignment:
Q  90 tttcccatgttgggaaagaattcaccttttccatgtgaaatgtcacct 137  Q
    ||||||||| |||||||| ||| ||||||||||||||||||| |||||    
T  1403086 tttcccatggtgggaaaggattaaccttttccatgtgaaatgccacct 1403039  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 43351014 - 43350967
Alignment:
Q  90 tttcccatgttgggaaagaattcaccttttccatgtgaaatgtcacct 137  Q
    ||||||||| |||||||| ||||||||||||||||| ||||| |||||    
T  43351014 tttcccatgatgggaaaggattcaccttttccatgttaaatgacacct 43350967  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 1741776 - 1741830
Alignment:
Q  18 agaaagaatatacagtgtagacaacctatagtaagatcagtgttcccttttaatc 72  Q
    ||||| |||||| |||||||||||| ||||||||||||| |||| ||||| ||||    
T  1741776 agaaaaaatatatagtgtagacaacttatagtaagatcattgtttcctttcaatc 1741830  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 35237305 - 35237259
Alignment:
Q  90 tttcccatgttgggaaagaattcaccttttccatgtgaaatgtcacc 136  Q
    ||||||||| |||||||| ||| |||||| |||||||||||||||||    
T  35237305 tttcccatggtgggaaaggattaacctttcccatgtgaaatgtcacc 35237259  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 39149471 - 39149517
Alignment:
Q  90 tttcccatgttgggaaagaattcaccttttccatgtgaaatgtcacc 136  Q
    ||||||||| |||||||| |||||||||| |||||||||||| ||||    
T  39149471 tttcccatggtgggaaaggattcacctttcccatgtgaaatgccacc 39149517  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 14616000 - 14615963
Alignment:
Q  25 atatacagtgtagacaacctatagtaagatcagtgttc 62  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  14616000 atatacggtgtggacaacctatagtaagatcagtgttc 14615963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 2458269 - 2458339
Alignment:
Q  6 agaggttgatga---agaaagaatatacagtgtagacaacctatagtaagatcagtgttcccttttaatct 73  Q
    ||||||||||||   ||||| || ||| ||||| ||||  |||||||||||||| ||||||||||||||||    
T  2458269 agaggttgatgacagagaaaaaacatatagtgtggacagtctatagtaagatcaatgttcccttttaatct 2458339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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