View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16724_high_9 (Length: 321)
Name: NF16724_high_9
Description: NF16724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16724_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 40590843 - 40590555
Alignment:
| Q |
19 |
atgaaatgcctttcaagtttcaacatttttccttgtggaagtaaacttgttgacatgatcatcttatgaatgaaatgaaatagagaacaggattagttgt |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40590843 |
atgaaatgcctttcaagtgtcaacatttttccttgtggaagttaacttgttgacatgatcatcttatgaatgaaatgaaatagagaataggattagttgt |
40590744 |
T |
|
| Q |
119 |
actcactcaatgcaatgatatagatgatatctttccttgattttggattgcattttgtgccattcatctttctgtctccctcatgtcctttcgggcataa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40590743 |
actcactcaatgcaatgatatagatgatatctttccttgattttggattgcattttgtgccattcatctttccgtctccctcatgtcctttcgggcataa |
40590644 |
T |
|
| Q |
219 |
acaatggtagcttccaggaagattgtcgcatgttgcctcttgaacacagtcattagactccgtgcattcattaatatctaaagaataat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40590643 |
acaatggtagcttccaggaagattgtcgcatgttgcctcttgaacacagtcattagactccgtgcattcattaatatctaaagaataat |
40590555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 40578890 - 40578608
Alignment:
| Q |
19 |
atgaaatgcctttcaagtttcaacatttttccttgtggaagtaaacttgttgacatgatcatcttatgaatgaaatgaaatagagaacaggattagttgt |
118 |
Q |
| |
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|||||||| |||||||||||||||| ||||| ||| | ||||||| | ||||||||||||| ||||||| ||| ||||||| |||| || | ||||| |
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| T |
40578890 |
atgaaatgtctttcaagtttcaacaattttcattgcgatagtaaacatattgacatgatcatgttatgaacgaattgaaataaagaatagaacgtgttgt |
40578791 |
T |
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| Q |
119 |
actcactcaatgcaatgatatagatgatatctttccttgattttggattgcattttgtgccattcatc--tttctgtctccctcatgtcctttcgggcat |
216 |
Q |
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||||||||| ||||||||| | ||||| ||||| |||||||| | | || |||||| | | |||| |||| |||||| |||| |||||| |||||| |
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| T |
40578790 |
actcactcagtgcaatgattaacatgatctctttacttgatttggtactggattttggac--tgcatctttttccgtctccttcatatccttttgggcat |
40578693 |
T |
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| Q |
217 |
aaacaatggtagcttccaggaagattgtcgcatgttgcctcttgaacacagtcattagactccgtgcattcattaatatctaaag |
301 |
Q |
| |
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||||||||||||||||||||||||||| |||||| ||| | | || ||||| ||| || ||| ||||||||| || |||||||| |
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| T |
40578692 |
aaacaatggtagcttccaggaagattgatgcatgtcgccccctcaaaacagtaattggattccttgcattcatcaacatctaaag |
40578608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 40572449 - 40572184
Alignment:
| Q |
19 |
atgaaatgcctttcaagtttcaacatttttccttgtggaagtaaacttgttgacatgatcatcttatgaatgaaatgaaatagagaacaggattagttgt |
118 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| |||| |||| | ||||||||||| ||||||||||| ||||||| |||| || | ||||| |
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| T |
40572449 |
atgaaatgcctttcaagtttcaacaattttcattgtgatagtacacttatggacatgatcatgttatgaatgaattgaaataaagaatagaacgtgttgt |
40572350 |
T |
|
| Q |
119 |
actcactcaatgcaatgatatagatgatatctttcctt------------gattttggattgcattttgtgccattcatctttctgtctccctcatgtcc |
206 |
Q |
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||||||||||||| || | | ||||||||||||||| ||||||||| ||||| ||| ||||| | || | ||||||||||| ||| |
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| T |
40572349 |
actcactcaatgcgatagttaacatgatatctttccttgatttggtactggattttggactgcatcctgttccattatttttcccgtctccctcatatcc |
40572250 |
T |
|
| Q |
207 |
tttcgggcataaacaatggtagcttccaggaagattgtcgcatgttgcctcttgaacacagtcatt |
272 |
Q |
| |
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|| |||||||||||||||||||| |||||||||| | |||||||||||| | |||||| ||||| |
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| T |
40572249 |
ttctgggcataaacaatggtagctcccaggaagatcgatgcatgttgcctcctcaacacaatcatt |
40572184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 40601446 - 40601143
Alignment:
| Q |
19 |
atgaaatgcctttcaagtttcaacatttttccttgtggaagtaaacttgttgacatgatcatc---ttatgaatgaaatgaaatagagaacaggattagt |
115 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| |||||||| ||| ||||||||||| |||||||||||| | |||||| |
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| T |
40601446 |
atgaaattcctttcaagtttcaacaattttcattgtgatagtaatcttgtagacatgatgatcatgttatgaatgaattgaaatagagaataaaattagt |
40601347 |
T |
|
| Q |
116 |
tgtactcactcaatgcaatgatatagatgatatctttccttgat------------tttggattgcattttgtgccattcatctttctgtctccctcatg |
203 |
Q |
| |
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| |||| ||||||||||||||||| | |||||| ||||||||| || ||| ||||| ||| ||||| | || | ||||||||||| |
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| T |
40601346 |
tttactaactcaatgcaatgatatccaagatatcattccttgatttggtactggagttcggactgcatcctgttccattatttttcccgtctccctcata |
40601247 |
T |
|
| Q |
204 |
tcctttcgggcataaacaatggtagcttccaggaagattgtcgcatgttgcctcttgaacacagtcattagactccgtgcattcattaatatctaaagaa |
303 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||| ||||| |||| | ||||| | |||||||| ||| || ||| |||| ||||||| |||||||| | |
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| T |
40601246 |
tccttctgggcatgaacaatggtagcttccgggatgattgatgcatctcgcctcctcaacacagtaattggattccatgcaatcattaacatctaaagga |
40601147 |
T |
|
| Q |
304 |
taat |
307 |
Q |
| |
|
|||| |
|
|
| T |
40601146 |
taat |
40601143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 301
Target Start/End: Complemental strand, 40596859 - 40596745
Alignment:
| Q |
187 |
tttctgtctccctcatgtcctttcgggcataaacaatggtagcttccaggaagattgtcgcatgttgcctcttgaacacagtcattagactccgtgcatt |
286 |
Q |
| |
|
|||| |||||| |||| |||||| ||||||||||||||||| ||||||||||||||| |||||| ||| | | || ||||||||| || ||| |||||| |
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| T |
40596859 |
tttccgtctccttcatatccttttgggcataaacaatggtaacttccaggaagattggtgcatgtcgcccccttaaaacagtcattggattccttgcatt |
40596760 |
T |
|
| Q |
287 |
cattaatatctaaag |
301 |
Q |
| |
|
||| || |||||||| |
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| T |
40596759 |
catcaacatctaaag |
40596745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 307
Target Start/End: Complemental strand, 40567677 - 40567562
Alignment:
| Q |
192 |
gtctccctcatgtcctttcgggcataaacaatggtagcttccaggaagattgtcgcatgttgcctcttgaacacagtcattagactccgtgcattcatta |
291 |
Q |
| |
|
|||||| |||| ||||| |||||||||||| || ||||||||||||| ||| |||||||||| | | |||||| | || || ||| ||||||||||| |
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| T |
40567677 |
gtctccttcatatccttccgggcataaacagtgatagcttccaggaaagttgatgcatgttgccccatcaacacaattgttggattccatgcattcatta |
40567578 |
T |
|
| Q |
292 |
atatctaaagaataat |
307 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
40567577 |
atatctagagaataat |
40567562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 157 - 307
Target Start/End: Original strand, 2016040 - 2016190
Alignment:
| Q |
157 |
gattttggattgcattttgtgccattcatctttctgtctccctcatgtcctttcgggcataaacaatggtagcttccaggaagattgtcgcatgttgcct |
256 |
Q |
| |
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||||||||| |||||||||| ||||||||||| | || |||||||| | || ||| |||||||| ||||||||||||||||||||| ||||||||| | |
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| T |
2016040 |
gattttggactgcattttgttccattcatcttcccgtttccctcatattctgccggacataaacactggtagcttccaggaagattggtgcatgttgctt |
2016139 |
T |
|
| Q |
257 |
cttgaacacagtcattagactccgtgcattcattaatatctaaagaataat |
307 |
Q |
| |
|
| | |||||||||||| |||||| | ||||||||||||||||||| ||||| |
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|
| T |
2016140 |
cctcaacacagtcattggactccatacattcattaatatctaaaggataat |
2016190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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