View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16724_low_1 (Length: 592)

Name: NF16724_low_1
Description: NF16724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16724_low_1
NF16724_low_1
[»] chr1 (1 HSPs)
chr1 (1-592)||(4410617-4411208)


Alignment Details
Target: chr1 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Original strand, 4410617 - 4411208
Alignment:
Q  1 aacttaacgaatctcgcttatagttcctcgaattgtagcaatgagctttcactaagtcttgcaacatctccaacttcaggtcaatgctcagagattagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4410617 aacttaacgaatctcgcttatagttcctcgaattgtagcaatgagctttcactaagtcttgcaacatctccaacttcagttcaatgctcagagattagtt 4410716  T
Q  101 gttcagacttaactcatagcatgaatggaacaagatcaggtttggaacaagcctcatgtagtagtatggaactttctatgagtttagggaatgataaaca 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4410717 gttctgacttaactcatagcatgaatggaacaagatcaggtttggaacaagcctcatgtagtagtatggaactttctatgagtttagggaatgataaaca 4410816  T
Q  201 tgtcaagttttcgcctgcaatactaggatcaagataccttgctgtaattcaggaaatacttgttcaaattgcaacattttcatttgaaaatcttgatgag 300  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4410817 tgtcaagttttcgcccgcaatattaggatcaagataccttgctgtaattcaggaaatacttgttcaaattgcaacattttcatttgaaaatcttgatgag 4410916  T
Q  301 ataaactattccggttctggtgttagaggccgaggaaataaatcaacttcgttgaacacagccaagcgaaggataggaataagtcgcgacgagagtccta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||    
T  4410917 ataaactattccggttctggtgttagaggccgaggaaataaatcaacttcgtcaaacacaaccaagcgaaggataggaataaatcgcgacgagagtccta 4411016  T
Q  401 tgtcagaagcttatgctgattcttcattgcaaaggcatgctgttgaatcaaagcaatctcaactcttgatgcttctacagatggtacattgctaaccact 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411017 tgtcagaagcttatgctgattcttcattgcaaaggcatgctgttgaatcaaagcaatctcaactcttgatgcttctacagatggtacattgctaaccact 4411116  T
Q  501 tagattacattacattcatttggttttcgtaaaaccgtttacggtcctgattgcgttagtatatgtctgctggtttcactcttgaacatgga 592  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411117 tagattacattacattcatttggttttcgtaaaaccgtttatggtcctgattgcgttagtatatgtctgctggtttcactcttgaacatgga 4411208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University