View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16724_low_2 (Length: 534)
Name: NF16724_low_2
Description: NF16724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16724_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 10 - 518
Target Start/End: Original strand, 54267946 - 54268466
Alignment:
| Q |
10 |
gcataggcatagacatagtacaaaattatttatggtactgtagttagtacgtagtagtagttaccgcaggtcagtatacggaagtacagtacatatacat |
109 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54267946 |
gcataggcataggcatagtacaaaattatttatggtactgtagttagtacgtagtagtagttaccgcaggtcagtatacggaagtacagtacatatacat |
54268045 |
T |
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| Q |
110 |
gaatgaagctactgctactagtgctaggtagtttagactttagacaagttgagcatgtggccaagaatctattcccataggaccaactactcctcctcct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54268046 |
gaatgaagctactgctactagtgctaggtagtttagactttagacaagttgagcatgtggccaagaatctattcccataggaccaactactcctcctcct |
54268145 |
T |
|
| Q |
210 |
cctctactgttaatagttgatatgtccctaaattcagcatttgtagcagctcctgagaatgcaatcagatcatgagcagcacca------------tcca |
297 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54268146 |
cctctactgttaataattgatatgtccctaaattcagcatttgtagcagctcctgagaatgcaatcagatcatgagcagcaccatccatctccatctcca |
54268245 |
T |
|
| Q |
298 |
tctccatctccacagggaataaagagttttcataattattattattgtcaataatccatcttaggttaagagcatcatctattgatttttgctgatcata |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
54268246 |
tctccatctccacagggaataaagagttttcataattattattattgtcaataatccatcttatgttaagagcatcatctattgatttctgctgatcata |
54268345 |
T |
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| Q |
398 |
gaaagtagcttctgtttttggaatggtctgcttcatggtgtaattttgttgtgacttgaagagtagttctgaagatggactattattgttgtttctggtg |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54268346 |
gaaagtagcttctgtttttggaatggtctgcttcatggtgtaattttgttgtgacttgaagagtagttctgaagatggactattattgttgtttctggtg |
54268445 |
T |
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| Q |
498 |
gtgtgattgatcattgagaag |
518 |
Q |
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| T |
54268446 |
gtgtgattgatcattgagaag |
54268466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 21132231 - 21132193
Alignment:
| Q |
65 |
agtagttaccgcaggtcagtatacggaagtacagtacat |
103 |
Q |
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| T |
21132231 |
agtagttaccgcaggtcagtataccgaagtacaatacat |
21132193 |
T |
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