View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16724_low_3 (Length: 508)
Name: NF16724_low_3
Description: NF16724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16724_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 214 - 500
Target Start/End: Original strand, 52034241 - 52034527
Alignment:
| Q |
214 |
acatggtcttgtttttactgtctacgtacccttttctatttacagactccaggtttgaatgttattactgagtacattatgggtgtgattttacccggcc |
313 |
Q |
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| T |
52034241 |
acatggtcttgtttttactgtctacgtacccttttctatttacagactccaggtttgaatgttattactgagtacattatgggtgtgattttacccggcc |
52034340 |
T |
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| Q |
314 |
gaccaatagccaacgtttgcttcaagacctacgggtatatgagtatgtctcaagctatttcctttttatctgatttcaagttaggacattacatgaagat |
413 |
Q |
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| T |
52034341 |
gaccaatagccaacgtttgcttcaagacctacgggtatatgagtatgtctcaagctatttcctttttatctgatttcaagttaggacattacatgaagat |
52034440 |
T |
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| Q |
414 |
cccaccaaggtcaatgttcatagttcaggtatattgtctcaggctatttcctttcatagttattctaaatggtgaatgctgatgatg |
500 |
Q |
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| T |
52034441 |
cccaccaaggtcaatgttcatagttcaggtatattgtctcaggctatttcctttcatagttattttaaatggtgaatactaatgatg |
52034527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 52034063 - 52034209
Alignment:
| Q |
17 |
cacttgcattgtgtattttcatgaaagaagagatacaaatgccatggtgggctctcatctttgcttctggacttgcactcatttttactcttcccgttgc |
116 |
Q |
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| T |
52034063 |
cacttgcattgtgtattttcaagaaagaagagatacaaatgccatggtgggctctcatctttgcttctggacttgcactcatttttactcttcccgttgc |
52034162 |
T |
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| Q |
117 |
catcataactgccaccactaatcaggtacgtacgcttcattccctca |
163 |
Q |
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| T |
52034163 |
catcataactgccaccactaatcaggtacgtacgcttcattccctca |
52034209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 2171172 - 2171112
Alignment:
| Q |
384 |
tgatttcaagttaggacattacatgaagatcccaccaaggtcaatgttcatagttcaggta |
444 |
Q |
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|||||||||| | ||||| |||||||| ||||| ||||| ||||||||| ||||||||||| |
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| T |
2171172 |
tgatttcaagcttggacactacatgaaaatccctccaagatcaatgttcttagttcaggta |
2171112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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