View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16724_low_6 (Length: 452)
Name: NF16724_low_6
Description: NF16724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16724_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 21 - 436
Target Start/End: Complemental strand, 28320001 - 28319589
Alignment:
| Q |
21 |
ttacaataaaaaatacattataattgaagttctcatgttccttattttataactgaacatacacattttcaatcgaatggttaggacacacaaattatgt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28320001 |
ttacaataaaaaatacattataattgaagttctcatgttccttattttataactgaacatacacattttcaatcgaatggttaggacacacaaattatgt |
28319902 |
T |
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| Q |
121 |
gctacgatcgtcataggaaaaatactacttcctccgtcccttaatataaccgtattttaaattcatgtgaccatataaacaagttacataattgcatttt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28319901 |
gctacgatcgtcataggaaaaatactacttcctccgtcccttaatataaccgtattttaaattcatgtgaccatataaacaagttacataattgcatttt |
28319802 |
T |
|
| Q |
221 |
cttcacataattcacatagaaatatatcttttcagctatcatattctcatgaatcttcaaatatggcttgaaacaaacgttcccttagcaattgaggtct |
320 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28319801 |
cttcacataattcacatagaaatatatctttccagctatcatattctcctgaatcttcaaatatggcttgaaacaaacgttcccttagcaattgaggtct |
28319702 |
T |
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| Q |
321 |
tgannnnnnnnnnnnnnnnngttctattttctactcggcaaaagatcaaaagttgtaaaacttgatgaaacctgggatgatttatacaacaaaactcaga |
420 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28319701 |
tga---ttttatttttttttgttctattttctactcggcaaaagatcaaaagttgtaaaacttgatgaaacctgggatgatttatacaacaaaactcaga |
28319605 |
T |
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| Q |
421 |
tttaaagggtgtaagc |
436 |
Q |
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| T |
28319604 |
tttaaagggtgtaagc |
28319589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 41967264 - 41967199
Alignment:
| Q |
234 |
acatagaaatatatcttttcagctatcatattctcatgaatcttcaaatatggcttgaaacaaacg |
299 |
Q |
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| T |
41967264 |
acatagaaatatatcttttctgctatcatatttccaggaatctttaaatataacttaaaacaaacg |
41967199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 15914332 - 15914396
Alignment:
| Q |
234 |
acatagaaatatatcttttcagctatcatattctcatgaatcttcaaatatggcttgaaacaaac |
298 |
Q |
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| T |
15914332 |
acatagaaatatatctttcctgctaccatattcccataaatctctaaatatgacttgaaacaaac |
15914396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 166
Target Start/End: Complemental strand, 2310509 - 2310480
Alignment:
| Q |
137 |
gaaaaatactacttcctccgtcccttaata |
166 |
Q |
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| T |
2310509 |
gaaaaatactacttcctccgtcccttaata |
2310480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 26655206 - 26655144
Alignment:
| Q |
241 |
aatatatcttttcagctatcatattctcatgaatcttcaaatatggcttgaaacaaacgttccct |
305 |
Q |
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||||||||||| | |||||||| ||||| |||| | |||||||| ||||||||||||||||||| |
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| T |
26655206 |
aatatatctttcctgctatcat--tctcaagaatttccaaatatgacttgaaacaaacgttccct |
26655144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 30969708 - 30969645
Alignment:
| Q |
234 |
acatagaaatatatcttttcagctatcatattctcatgaatcttcaaatatggcttgaaacaaac |
298 |
Q |
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|||||| ||||| ||||| || |||||||||||||| |||||| ||||||| |||||||||||| |
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| T |
30969708 |
acataggaatatttctttcca-ctatcatattctcaggaatctccaaatataacttgaaacaaac |
30969645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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