View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16724_low_7 (Length: 433)

Name: NF16724_low_7
Description: NF16724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16724_low_7
NF16724_low_7
[»] chr2 (1 HSPs)
chr2 (1-433)||(43743541-43743983)
[»] chr6 (1 HSPs)
chr6 (3-278)||(32079080-32079362)
[»] chr4 (3 HSPs)
chr4 (2-234)||(11334451-11334690)
chr4 (208-337)||(11334323-11334452)
chr4 (220-275)||(198216-198271)
[»] chr3 (1 HSPs)
chr3 (292-339)||(50687748-50687795)
[»] chr7 (1 HSPs)
chr7 (293-343)||(23283883-23283933)
[»] scaffold0229 (1 HSPs)
scaffold0229 (292-339)||(15273-15320)
[»] chr1 (3 HSPs)
chr1 (292-339)||(1403039-1403086)
chr1 (292-339)||(43350967-43351014)
chr1 (220-274)||(1741776-1741830)
[»] chr8 (1 HSPs)
chr8 (292-338)||(35237259-35237305)
[»] chr5 (3 HSPs)
chr5 (292-338)||(39149471-39149517)
chr5 (227-264)||(14615963-14616000)
chr5 (208-275)||(2458269-2458339)


Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 43743541 - 43743983
Alignment:
Q  1 agatctttgttattttcttcatttttagagcatgctacaaaa-ccaattttaaatgccatgaacttgttcatcgagatgttgagcaagtatgaataacgg 99  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43743541 agatctttgttattttcttcatttttagagcatgctacaaaaaccaattttaaatgccatgaacttgttcatcgagatgttgagcaagtatgaataacgg 43743640  T
Q  100 tacccttaatttgttatttttatgatttattggttattattcttcttcattgaaataaa---------acggaggttgaagacaatgaaagtgaaagcta 190  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||         ||||||||||||| |||| |||||||||| ||    
T  43743641 tacccttaatttgttatttttatgatttattggttattgttcttcttcattgaaataaaattccatagacggaggttgaaggcaataaaagtgaaagtta 43743740  T
Q  191 agccgtgaatgacactaagaggttgatgaagaaagaatatacagtgtagacaacctatagtaagatcagtgttcccttttaatctgattgttnnnnnnnn 290  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||| |||            
T  43743741 agccgtgaatgacactaagagcttgatgaagaaagaatatacattgtagacaacctatagtaagatcaatgttccctttaaatctgatggttaaaaaaaa 43743840  T
Q  291 gtttcccatgttgggaaagaattcaccttttccatgtgaaatgtcacctgtaagtttgtcaattgttgtactttgcttagagctggggagctacttatat 390  Q
    |||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43743841 gtttcccatggtgggaaaggattcacctttcccatgtgaaatgtcacctgtaagtttgtcaattgttgtactttgcttagagctggggggctacttatat 43743940  T
Q  391 aggcaagtaagatttggctgttgcaacatgtatcgccttgatg 433  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  43743941 aggcaagtaagatttggctgttgcaacatgtatccccttgatg 43743983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 278
Target Start/End: Complemental strand, 32079362 - 32079080
Alignment:
Q  3 atctttgttattttcttcatttttagagcatgctacaaaa-ccaattttaaatgccatgaacttgttcatcgagatgttgagcaagtatgaataacggta 101  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||    
T  32079362 atctttgttattttcttcatttttagagcatgctgcaaaaaccaattttaaatgccatgaacttgttcaacgagatgttgagcaagtatgaataa-tgta 32079264  T
Q  102 cccttaatttgttatttttatgatttattggttattattcttcttcattgaaataaa---------acggaggttgaagacaatgaaagtgaaagctaag 192  Q
    |||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||||         ||||||||||||||||||||||||||||||||||    
T  32079263 cccttaatttgttattttcatgatttattggttattgttcttcatcattcaaataaaattccatagacggaggttgaagacaatgaaagtgaaagctaag 32079164  T
Q  193 ccgtgaatgacactaagaggttgatgaagaaagaatatacagtgtagacaacctatagtaagatcagtgttcccttttaatctgat 278  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||    
T  32079163 ccgtgaatgacactaagaggttgatgaagaaagaatatacaatgt--acaacctatagtaagatcagtgttcccttttaatctgat 32079080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 2 - 234
Target Start/End: Complemental strand, 11334690 - 11334451
Alignment:
Q  2 gatctttgttattttcttcatttttagagcatgctacaaaa-ccaattttaaatgccatgaacttgttcatcgagatgttgagcaagtatgaataacggt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11334690 gatctttgttattttcttcatttttagagcatgctgcaaaaaccaattttaaatgccatgaacttgttcatcgagatgttgagcaagtatgaataacggt 11334591  T
Q  101 acccttaatttgttatttttatgatttattggttattattcttcttcattgaaataaa---------acggaggttgaagacaatgaaagtgaaagctaa 191  Q
    |||||||||||||||||||||||||||||||||   |||| |||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  11334590 acccttaatttgttatttttatgatttattggt---tattgttcttcattgaaataaaattccatagacggaggttgaagacaatgaaagtgaaagctaa 11334494  T
Q  192 gccgtgaatgacactaagaggttgatgaagaaagaatatacag 234  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  11334493 gccgtgaatgacactcagaggttgatgaagaaagaatatacag 11334451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 208 - 337
Target Start/End: Complemental strand, 11334452 - 11334323
Alignment:
Q  208 agaggttgatgaagaaagaatatacagtgtagacaacctatagtaagatcagtgttcccttttaatctgattgttnnnnnnnngtttcccatgttgggaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||        |||||||||  ||||||    
T  11334452 agaggttgatgaagaaagaatatacagtgtagacaacctatagtaagattagtgttcccttttaatctaatggttaaaaaaaagtttcccatagtgggaa 11334353  T
Q  308 agaattcaccttttccatgtgaaatgtcac 337  Q
    || |||||||||| | || |||||||||||    
T  11334352 aggattcacctttcctatatgaaatgtcac 11334323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 198271 - 198216
Alignment:
Q  220 agaaagaatatacagtgtagacaacctatagtaagatcagtgttcccttttaatct 275  Q
    ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  198271 agaaaaaatatacagtgtagacaacctataataagatcagtattcccttttaatct 198216  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 50687748 - 50687795
Alignment:
Q  292 tttcccatgttgggaaagaattcaccttttccatgtgaaatgtcacct 339  Q
    ||||||||| |||||||||||| |||||| ||||||||||||||||||    
T  50687748 tttcccatggtgggaaagaattaacctttcccatgtgaaatgtcacct 50687795  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 23283883 - 23283933
Alignment:
Q  293 ttcccatgttgggaaagaattcaccttttccatgtgaaatgtcacctgtaa 343  Q
    |||||||| |||||||| |||| ||||| ||||||||||||||||||||||    
T  23283883 ttcccatggtgggaaaggattcccctttcccatgtgaaatgtcacctgtaa 23283933  T

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Target: scaffold0229 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 15273 - 15320
Alignment:
Q  292 tttcccatgttgggaaagaattcaccttttccatgtgaaatgtcacct 339  Q
    ||||||||| |||||||| ||| ||||||||||||||||||| |||||    
T  15273 tttcccatggtgggaaaggattaaccttttccatgtgaaatgccacct 15320  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 1403086 - 1403039
Alignment:
Q  292 tttcccatgttgggaaagaattcaccttttccatgtgaaatgtcacct 339  Q
    ||||||||| |||||||| ||| ||||||||||||||||||| |||||    
T  1403086 tttcccatggtgggaaaggattaaccttttccatgtgaaatgccacct 1403039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 43351014 - 43350967
Alignment:
Q  292 tttcccatgttgggaaagaattcaccttttccatgtgaaatgtcacct 339  Q
    ||||||||| |||||||| ||||||||||||||||| ||||| |||||    
T  43351014 tttcccatgatgggaaaggattcaccttttccatgttaaatgacacct 43350967  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 1741776 - 1741830
Alignment:
Q  220 agaaagaatatacagtgtagacaacctatagtaagatcagtgttcccttttaatc 274  Q
    ||||| |||||| |||||||||||| ||||||||||||| |||| ||||| ||||    
T  1741776 agaaaaaatatatagtgtagacaacttatagtaagatcattgtttcctttcaatc 1741830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 35237305 - 35237259
Alignment:
Q  292 tttcccatgttgggaaagaattcaccttttccatgtgaaatgtcacc 338  Q
    ||||||||| |||||||| ||| |||||| |||||||||||||||||    
T  35237305 tttcccatggtgggaaaggattaacctttcccatgtgaaatgtcacc 35237259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 39149471 - 39149517
Alignment:
Q  292 tttcccatgttgggaaagaattcaccttttccatgtgaaatgtcacc 338  Q
    ||||||||| |||||||| |||||||||| |||||||||||| ||||    
T  39149471 tttcccatggtgggaaaggattcacctttcccatgtgaaatgccacc 39149517  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 14616000 - 14615963
Alignment:
Q  227 atatacagtgtagacaacctatagtaagatcagtgttc 264  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  14616000 atatacggtgtggacaacctatagtaagatcagtgttc 14615963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 2458269 - 2458339
Alignment:
Q  208 agaggttgatga---agaaagaatatacagtgtagacaacctatagtaagatcagtgttcccttttaatct 275  Q
    ||||||||||||   ||||| || ||| ||||| ||||  |||||||||||||| ||||||||||||||||    
T  2458269 agaggttgatgacagagaaaaaacatatagtgtggacagtctatagtaagatcaatgttcccttttaatct 2458339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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