View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16724_low_8 (Length: 410)

Name: NF16724_low_8
Description: NF16724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16724_low_8
NF16724_low_8
[»] chr5 (14 HSPs)
chr5 (18-389)||(33080036-33080426)
chr5 (258-389)||(41513559-41513690)
chr5 (258-389)||(41522525-41522656)
chr5 (136-253)||(41519574-41519691)
chr5 (136-259)||(41509351-41509474)
chr5 (85-190)||(41519439-41519544)
chr5 (276-381)||(41498311-41498416)
chr5 (85-190)||(41509219-41509321)
chr5 (68-204)||(33079708-33079844)
chr5 (85-159)||(33080010-33080084)
chr5 (149-194)||(33079873-33079918)
chr5 (274-322)||(41468065-41468113)
chr5 (18-58)||(41509245-41509285)
chr5 (18-102)||(41519465-41519549)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 33080036 - 33080426
Alignment:
Q  18 aaaactttagattctaactcacagttctttgtttttagcacgtgaagt-----------gtattcctatcttccaccaacttttcattcaacttctgcaa 106  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||           ||||||||||||||||||||||||||| |||||||||||||    
T  33080036 aaaactttagattccaactcacagttctttgtttttagcacgtcaagtgtatttcaagtgtattcctatcttccaccaacttttcaatcaacttctgcaa 33080135  T
Q  107 ctccaaaactttagaatctagctcaaagttctttgtttttagcacatcaagtgcattgccatcttccacacttttttctttcaactccaaaacttcattg 206  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33080136 ctccaaaacattagaatctagctcacagttctttgtttttagcacatcaagtgcattgccatcttccacacttttttctttcaactccaaaacttcattg 33080235  T
Q  207 tccaatacactattcttttttcttagcatatcaagttcattcccatcttccacattttatccatggcctaccaaacctcaacccataatccaacaagatt 306  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  33080236 tccaatacaccattcttttttcttagcatatcaagttcattcccatcttccacattttatccatggcctactaaacttcaacccataatccaacaagatt 33080335  T
Q  307 ttcactatatttctttgtattgaactcattttcttttcgttgaagg--------tgttttctcttccaatttctaataggagtctcatctg 389  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  33080336 ttcactatatttctttgtattaaactcattttcttttcgttgaaggtgtttgactgttttctcttccaatttctaataggagtctcatctg 33080426  T

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Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 258 - 389
Target Start/End: Original strand, 41513559 - 41513690
Alignment:
Q  258 acattttatccatggcctaccaaacctcaacccataatccaacaagattttcactatatttctttgtattgaactcattttcttttcgttgaaggtgttt 357  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  41513559 acattttatccatggcctaataaacctcaacccaaaatccaacaagattttcactatatttctttgtattaaactcattttcttttcgtggaaggtgttt 41513658  T
Q  358 tctcttccaatttctaataggagtctcatctg 389  Q
    ||||||||||||||||||||||||||||||||    
T  41513659 tctcttccaatttctaataggagtctcatctg 41513690  T

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Target: chr5; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 258 - 389
Target Start/End: Original strand, 41522525 - 41522656
Alignment:
Q  258 acattttatccatggcctaccaaacctcaacccataatccaacaagattttcactatatttctttgtattgaactcattttcttttcgttgaaggtgttt 357  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  41522525 acattttatccatggcctaccaaacctcaatccataatccaacaagattttcactataattctttgtattaaactcattttcttttcgtggaaggtgttt 41522624  T
Q  358 tctcttccaatttctaataggagtctcatctg 389  Q
    ||||||||||||||| ||||||||||| ||||    
T  41522625 tctcttccaatttctgataggagtctcgtctg 41522656  T

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Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 41519574 - 41519691
Alignment:
Q  136 tctttgtttttagcacatcaagtgcattgccatcttccacacttttttctttcaactccaaaacttcattgtccaatacactattcttttttcttagcat 235  Q
    ||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  ||||||||||||| |||    
T  41519574 tctttgtttttggcatatcaagcgcattgccatcttccacacttttttctttcaactccaaaacttcattgtctaattcacccttcttttttcttaacat 41519673  T
Q  236 atcaagttcattcccatc 253  Q
    |||||||||||| |||||    
T  41519674 atcaagttcattgccatc 41519691  T

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Target: chr5; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 136 - 259
Target Start/End: Original strand, 41509351 - 41509474
Alignment:
Q  136 tctttgtttttagcacatcaagtgcattgccatcttccacacttttttctttcaactccaaaacttcattgtccaatacactattcttttttcttagcat 235  Q
    ||||||||||||||| ||||| |||||||||||||||| |||||||||  ||||||||||||||||||||||| ||| ||   ||||||||||||| |||    
T  41509351 tctttgtttttagcatatcaattgcattgccatcttccgcactttttttattcaactccaaaacttcattgtctaattcaaccttcttttttcttaacat 41509450  T
Q  236 atcaagttcattcccatcttccac 259  Q
    |||||||||||||||||| |||||    
T  41509451 atcaagttcattcccatcctccac 41509474  T

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Target: chr5; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 41519439 - 41519544
Alignment:
Q  85 acttttcattcaacttctgcaactccaaaactttagaatctagctcaaagttctttgtttttagcacatcaagtgcattgccatcttccacacttttttc 184  Q
    ||||||| |||||||||| |||||||||||||||| | |||||||||||||||||| | |||||||||||||||||||| |||||||||||  |||||||    
T  41519439 acttttccttcaacttctccaactccaaaactttaaattctagctcaaagttctttctgtttagcacatcaagtgcatttccatcttccaccattttttc 41519538  T
Q  185 tttcaa 190  Q
     |||||    
T  41519539 cttcaa 41519544  T

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Target: chr5; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 276 - 381
Target Start/End: Original strand, 41498311 - 41498416
Alignment:
Q  276 accaaacctcaacccataatccaacaagattttcactatatttctttgtattgaactcattttcttttcgttgaaggtgttttctcttccaatttctaat 375  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||||| |||||  ||||||||||||||  | ||||||||||||| ||| ||||| | ||    
T  41498311 accaaaccttaacccataatctaacaagagtttcactatatttcttggtattagactcattttcttttaatggaaggtgttttctattcaaatttatcat 41498410  T
Q  376 aggagt 381  Q
    ||||||    
T  41498411 aggagt 41498416  T

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Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 41509219 - 41509321
Alignment:
Q  85 acttttcattcaacttctgcaactccaaaactttagaatctagctcaaagttctttgtttttagcacatcaagtgcattgccatcttccacacttttttc 184  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||||| |||||||| ||||||||||||    |||||| |||||||||||  |||||||    
T  41509219 acttttccttcaacttctccaactccaaaactttagattctagctcacagttctttctttttagcacat---ttgcatttccatcttccaccattttttc 41509315  T
Q  185 tttcaa 190  Q
     |||||    
T  41509316 cttcaa 41509321  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 33079708 - 33079844
Alignment:
Q  68 attcctatcttccaccaacttttcattcaacttctgcaactccaaaactttagaatctagctcaaagttctttgtttttagcacatcaagtgcattgcca 167  Q
    ||||||||||||| || ||||||| |||||||||  |||||||| ||||| ||| || | ||||  ||||||| | |||| |||||||| ||||||  ||    
T  33079708 attcctatcttcctcccacttttctttcaacttcctcaactccacaacttcagattccaactcactgttctttctctttaccacatcaattgcattctca 33079807  T
Q  168 tcttccacacttttttctttcaactccaaaacttcat 204  Q
    || ||||| |||||| | |||| ||||||||||||||    
T  33079808 tcatccactctttttcccttcagctccaaaacttcat 33079844  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 33080010 - 33080084
Alignment:
Q  85 acttttcattcaacttctgcaactccaaaactttagaatctagctcaaagttctttgtttttagcacatcaagtg 159  Q
    ||||||| ||||||||   |||||||||||||||||| || | |||| ||||||||||||||||||| |||||||    
T  33080010 acttttccttcaactttgtcaactccaaaactttagattccaactcacagttctttgtttttagcacgtcaagtg 33080084  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 33079873 - 33079918
Alignment:
Q  149 cacatcaagtgcattgccatcttccacacttttttctttcaactcc 194  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||    
T  33079873 cacatcaagtgcatttccatcttccacccttttttccttcaactcc 33079918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 41468065 - 41468113
Alignment:
Q  274 ctaccaaacctcaacccataatccaacaagattttcactatatttcttt 322  Q
    |||||||||||||||  ||||||||| || |||||||||||||||||||    
T  41468065 ctaccaaacctcaacagataatccaaaaacattttcactatatttcttt 41468113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 41509245 - 41509285
Alignment:
Q  18 aaaactttagattctaactcacagttctttgtttttagcac 58  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  41509245 aaaactttagattctagctcacagttctttctttttagcac 41509285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 41519465 - 41519549
Alignment:
Q  18 aaaactttagattctaactcacagttctttgtttttagcacgtgaagtgtattcctatcttccaccaacttttcattcaacttct 102  Q
    ||||||||| |||||| |||| |||||||| | |||||||| | ||||| ||| | |||||||||||  ||||| ||||| ||||    
T  41519465 aaaactttaaattctagctcaaagttctttctgtttagcacatcaagtgcatttccatcttccaccattttttccttcaatttct 41519549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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