View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16725_high_1 (Length: 504)
Name: NF16725_high_1
Description: NF16725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16725_high_1 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 6 - 488
Target Start/End: Original strand, 14003254 - 14003736
Alignment:
| Q |
6 |
tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtgctagccagaaagagagacttgaattgagg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003254 |
tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtgctagccagaaagagagacttgaattgagg |
14003353 |
T |
|
| Q |
106 |
gtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgaga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14003354 |
gtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgaga |
14003453 |
T |
|
| Q |
206 |
gcaaagaaagtggaaactctgcgcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattca |
305 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14003454 |
gcaaagaaagtggaaactgtgagcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcagcacaatgatcattca |
14003553 |
T |
|
| Q |
306 |
aaaaatcagcatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtac |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14003554 |
aaaaatcagcatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtac |
14003653 |
T |
|
| Q |
406 |
aagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatacgaaatcccgtcaaaagaagagaag |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
14003654 |
aagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatatgaaatcccgtcaaaagaagagaag |
14003736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 6 - 488
Target Start/End: Complemental strand, 5767553 - 5767068
Alignment:
| Q |
6 |
tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtg---ctagccagaaagagagacttgaattg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| |
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|
| T |
5767553 |
tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttctaaacaagcggcgctagccagaaagagagacttgaattg |
5767454 |
T |
|
| Q |
103 |
agggtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5767453 |
agggtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatg |
5767354 |
T |
|
| Q |
203 |
agagcaaagaaagtggaaactctgcgcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcat |
302 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5767353 |
agagcaaagaaagtggaaactgtgagcaagcgacaattaccaaggttgagagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcat |
5767254 |
T |
|
| Q |
303 |
tcaaaaaatcagcatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgag |
402 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5767253 |
tcaaaaaatcagtatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgag |
5767154 |
T |
|
| Q |
403 |
tacaagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatacgaaatcccgtcaaaagaagagaag |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5767153 |
tacaagcctcctcaaaggaagactttccattgcaatggaggagagaaattgatctgagatacgaaatcccgtcaaaagaagagaag |
5767068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 17627655 - 17627610
Alignment:
| Q |
296 |
tgatcattcaaaaaatcagcatattgaagatccaaatgttggatac |
341 |
Q |
| |
|
|||| ||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
17627655 |
tgattattcaaaaaataagcatactgaagatccaaatgttggatac |
17627610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 336
Target Start/End: Complemental strand, 19468138 - 19468064
Alignment:
| Q |
262 |
atcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttg |
336 |
Q |
| |
|
||||||||||||||||||||||| | ||||| | |||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
19468138 |
atcaccaagaaacaaagacaacttatcaacatagtgatcattcaaaaacccagcacgttgaagatccaaatgttg |
19468064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 462
Target Start/End: Complemental strand, 38267213 - 38266985
Alignment:
| Q |
235 |
acaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgt |
334 |
Q |
| |
|
||||| || |||||| ||||| | ||||| | |||||||||||||||||| |||||| |||||| | | |||||||| | |||||| ||||||||| |
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| T |
38267213 |
acaataactaaggtttatagacaccagatgaggaagaaacaaagacaactcggcaacatggtgatcagtgagaaaatcagtttcttgaaggtccaaatgt |
38267114 |
T |
|
| Q |
335 |
tggatacgtttcgacttagataacaaaaatga-gattccagaataagtatatccggggcaatagctgagtacaagcctcctcaaaggaagactttccatt |
433 |
Q |
| |
|
|| |||||| | | ||||| ||||| | ||||||||| |||| || |||| |||||| | ||| |||| ||| ||||||||||||||| |||| |
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|
| T |
38267113 |
tgtatacgtggacagtaggataaaaaaaagcaagattccagagaaagtgtagccggtgcaatatccgaggccaaggctcgtcaaaggaagactttgcatt |
38267014 |
T |
|
| Q |
434 |
gcaatggaggagaggaattgatctgagat |
462 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||| |
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|
| T |
38267013 |
gcaatagaggaaaggaagtgatcggagat |
38266985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 447
Target Start/End: Original strand, 641449 - 641580
Alignment:
| Q |
316 |
atattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtacaagcctcctc |
415 |
Q |
| |
|
|||||||||||||| |||||| | || ||| ||| ||||||||| | |||||||| ||||||||| |||| ||||| || ||| ||||| ||| || |
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|
| T |
641449 |
atattgaagatccagatgttgtaaacatttactcttggataacaaacacaagattccatcataagtatagccggtgcaattgcagaggacaagtctcgtc |
641548 |
T |
|
| Q |
416 |
aaaggaagactttccattgcaatggaggagag |
447 |
Q |
| |
|
|||||||| | || ||||||||| |||||||| |
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|
| T |
641549 |
aaaggaaggcctttcattgcaatagaggagag |
641580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 340
Target Start/End: Original strand, 547382 - 547460
Alignment:
| Q |
262 |
atcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggata |
340 |
Q |
| |
|
||||||||||||||||||||| ||| |||| |||| | |||||||| |||||| ||||||||| |||||||||||| |
|
|
| T |
547382 |
atcaccaagaaacaaagacaagtcaagaacatgttgattagtcaaaaaaacagcattttgaagatctaaatgttggata |
547460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 342
Target Start/End: Complemental strand, 55908376 - 55908278
Alignment:
| Q |
244 |
aaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggatacg |
342 |
Q |
| |
|
|||||| ||||| | || |||||||||||||||||||||||| || ||| |||||||||| ||| |||| |||||||||||||||||| ||||| |
|
|
| T |
55908376 |
aaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacg |
55908278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 465
Target Start/End: Original strand, 1601013 - 1601073
Alignment:
| Q |
405 |
caagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatacg |
465 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||| |||||||| || ||||| |||||||| |
|
|
| T |
1601013 |
caagcctcctcaaaggaggattttcctttgcaatagaggagagcaactgatccgagatacg |
1601073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 444
Target Start/End: Complemental strand, 3438226 - 3438101
Alignment:
| Q |
319 |
ttgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtacaagcctcctcaaa |
418 |
Q |
| |
|
|||||||||||||||||| |||| || |||| ||||||| | | ||||| ||| |||| |||| |||| ||||| | ||| |||||||| |||||| |
|
|
| T |
3438226 |
ttgaagatccaaatgttgtatacattgacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctcaaa |
3438127 |
T |
|
| Q |
419 |
ggaagactttccattgcaatggagga |
444 |
Q |
| |
|
||||||| | | |||||||| ||||| |
|
|
| T |
3438126 |
ggaagacctccaattgcaatagagga |
3438101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 390 - 460
Alignment:
| Q |
266 |
ccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttg |
336 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
390 |
ccaagaaacaaagacaactctgcaacatcatgatcattcataaacatggcattttgaagatccaaatgttg |
460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 342
Target Start/End: Complemental strand, 1037312 - 1037214
Alignment:
| Q |
244 |
aaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggatacg |
342 |
Q |
| |
|
|||||| ||||| | || |||||||||||||||||||||||| || ||| |||||||||| ||| |||| |||||||||||||||||| ||||| |
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|
| T |
1037312 |
aaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacg |
1037214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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