View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16725_high_2 (Length: 340)
Name: NF16725_high_2
Description: NF16725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16725_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 42237465 - 42237785
Alignment:
| Q |
1 |
aaattaaaatgcgttttgacatgcctggtctttccaaggaagatgttaaggtatcggttgagaatgatgttcttgtcataaaaagtgacatgcataagga |
100 |
Q |
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| T |
42237465 |
aaattaaaatgcgttttgacatgcctggtctttccaaggaagatgttaaggtatcggttgagaatgatgttcttgtcataaaaagtgacatgcataagga |
42237564 |
T |
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| Q |
101 |
ggaaagtggtgaagaagattcttggtcaagaaagagttatagttcttatgatacaaggctcaagcttcctgataactgtgagaaggataaggttaaggca |
200 |
Q |
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| T |
42237565 |
ggaaagtggtgaagaagattcttggtcaagaaagagttatagttcttatgatacaaggctcaagcttcctgataactgtgagaaggataaggttaaggca |
42237664 |
T |
|
| Q |
201 |
gagttgaaaaatggtgtgctttatatcactgttcctaagaccaaagttgaacgcaaggttattgacgttcaaatccagtgacatgcgaggactttttata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42237665 |
gagttgaaaaatggtgtgctttatatcactgttcctaagaccaaagttgaacgcaaggttattgacgttcaaatccagtgacatgcgaggactttttata |
42237764 |
T |
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| Q |
301 |
gcgtcatcttcaactggtgtg |
321 |
Q |
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||||| ||||||||||||||| |
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| T |
42237765 |
gcgtcctcttcaactggtgtg |
42237785 |
T |
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