View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16725_low_1 (Length: 734)
Name: NF16725_low_1
Description: NF16725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16725_low_1 |
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| [»] chr2 (5 HSPs) |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-129; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 454 - 734
Target Start/End: Original strand, 2045977 - 2046256
Alignment:
| Q |
454 |
gttgggacat-attcaatccccaaataagcttcaagttgatcttctctctatcgttcataattttaaaacgctagcgcaataaaggagcagaaatacgat |
552 |
Q |
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| T |
2045977 |
gttgggacatgattcaatcctcaaataagcttcgagttgatcttctctctatcgttcataattttaaaacgttagcgcaataaaggagcagaaatacgat |
2046076 |
T |
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| Q |
553 |
cactcatacgtacgcgtcttttcgctgttatacttcatattaacacacaagtttgttagagtacaattacttgaactagaaattaattggataagattga |
652 |
Q |
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| T |
2046077 |
cactcatacgtacgcatcttttcgctgttatacttcatattaacac--aagtttgttagactacatttacttgaactagaaattaattggataagattga |
2046174 |
T |
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| Q |
653 |
gttagttagagactgatcatatagttaccacagttagtagcataaccatctctacatacatggttattgcatttgtagaata |
734 |
Q |
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| T |
2046175 |
gttagttagagactgatcacatagttaccacagttagtagcataaccatctctacatacatggttattgcatttgtagaata |
2046256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 2045632 - 2045835
Alignment:
| Q |
19 |
tcttactctttatttggtatctaacaagtactctcgttgtggagataaacaaaatagttctaattgaagagagatgttttatgaaacaacttt-act--- |
114 |
Q |
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| T |
2045632 |
tcttactctttatttggtatctaacaagtactctcgttgtggagacaaacaaaatagttctaattgaagagagatgttttatgaagcaacttttactttc |
2045731 |
T |
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| Q |
115 |
-----aaccgtgtttaatactatatcctttataacttttaaacatcttgttagtgaaataattcatcaaaaatattaaagagtatccttaggatattgtt |
209 |
Q |
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| T |
2045732 |
aacagaaccgtgttttttactatatcctttataacttttaaacatcttgttagtgaaataactcatcaaaaatattaaagagtatccttaggatattgtt |
2045831 |
T |
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| Q |
210 |
taag |
213 |
Q |
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|||| |
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| T |
2045832 |
taag |
2045835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 276 - 359
Target Start/End: Original strand, 2045898 - 2045981
Alignment:
| Q |
276 |
ctatgttctttaaaacaatattcatcaaactatttgcaatttcatatggagatgtctgaataacaaagatattcacttggttgg |
359 |
Q |
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| T |
2045898 |
ctatgttctttaaaacaatattcatgaaactatttgcaatttcatatggagaggtctgaataacaaagatattcacttggttgg |
2045981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 2052558 - 2052631
Alignment:
| Q |
139 |
tataacttttaaacatcttgttagtgaaataattcatcaaaaatattaaagagtatccttaggatattgtttaag |
213 |
Q |
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| T |
2052558 |
tataacttttaaacatcttgttagttaaataatttatgaaaaatattaaaaagt-gccttatgatatcgtttaag |
2052631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 2052473 - 2052531
Alignment:
| Q |
18 |
atcttactctttatttggtatctaacaagtactctcgttgtggagataaacaaaatagt |
76 |
Q |
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| T |
2052473 |
atcttattctttattctatatctaacaaatactctcgttgtggaggtaaactaaatagt |
2052531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 597 - 660
Target Start/End: Original strand, 23509223 - 23509286
Alignment:
| Q |
597 |
acacaagtttgttagagtacaattacttgaactagaaattaattggataagattgagttagtta |
660 |
Q |
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| T |
23509223 |
acacaaatttgctagagtttaattacgtgaactagaagttagttggataagattgagttagtta |
23509286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 546
Target Start/End: Complemental strand, 46939 - 46899
Alignment:
| Q |
506 |
gttcataattttaaaacgctagcgcaataaaggagcagaaa |
546 |
Q |
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| T |
46939 |
gttcataattttaaaacgttagcgcaataaaagagcagaaa |
46899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 546
Target Start/End: Complemental strand, 15044157 - 15044116
Alignment:
| Q |
505 |
cgttcataattttaaaacgctagcgcaataaaggagcagaaa |
546 |
Q |
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| T |
15044157 |
cgttcataattttcaaacgttagcgcaataaaagagcagaaa |
15044116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 659
Target Start/End: Complemental strand, 35987850 - 35987789
Alignment:
| Q |
598 |
cacaagtttgttagagtacaattacttgaactagaaattaattggataagattgagttagtt |
659 |
Q |
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| T |
35987850 |
cacaagtttgttagaggttagttatttgagctagaagttaattgaataagattgagttagtt |
35987789 |
T |
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