View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16725_low_4 (Length: 376)

Name: NF16725_low_4
Description: NF16725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16725_low_4
NF16725_low_4
[»] chr1 (15 HSPs)
chr1 (20-366)||(28858067-28858423)
chr1 (307-360)||(33380931-33380984)
chr1 (307-366)||(27761843-27761902)
chr1 (307-354)||(12906186-12906233)
chr1 (307-366)||(2493822-2493881)
chr1 (316-366)||(24159803-24159853)
chr1 (244-276)||(23193349-23193381)
chr1 (244-276)||(33381048-33381080)
chr1 (311-354)||(25661839-25661882)
chr1 (311-354)||(32987276-32987319)
chr1 (307-349)||(33301201-33301244)
chr1 (244-274)||(31063893-31063923)
chr1 (244-276)||(2493944-2493976)
chr1 (307-366)||(18784553-18784613)
chr1 (312-360)||(36724745-36724793)
[»] chr4 (16 HSPs)
chr4 (307-366)||(20513138-20513197)
chr4 (314-366)||(55081707-55081759)
chr4 (239-274)||(15020595-15020630)
chr4 (311-366)||(16595938-16595993)
chr4 (244-276)||(33723045-33723077)
chr4 (307-366)||(42758759-42758819)
chr4 (244-276)||(55081822-55081854)
chr4 (307-349)||(5271440-5271483)
chr4 (311-349)||(5928240-5928279)
chr4 (307-349)||(13522013-13522056)
chr4 (307-349)||(16421060-16421103)
chr4 (307-349)||(31273552-31273595)
chr4 (307-349)||(31765917-31765960)
chr4 (307-366)||(33722924-33722983)
chr4 (307-349)||(37259898-37259941)
chr4 (244-276)||(16596062-16596094)
[»] chr8 (15 HSPs)
chr8 (311-366)||(2470010-2470065)
chr8 (307-366)||(19949850-19949909)
chr8 (311-359)||(19954308-19954356)
chr8 (307-358)||(4544263-4544314)
chr8 (307-360)||(34517273-34517325)
chr8 (244-276)||(34517179-34517211)
chr8 (307-349)||(15875689-15875732)
chr8 (307-349)||(18876388-18876431)
chr8 (307-349)||(31449887-31449930)
chr8 (307-349)||(33416578-33416621)
chr8 (307-349)||(40125906-40125949)
chr8 (307-349)||(44925944-44925987)
chr8 (247-276)||(19954211-19954240)
chr8 (244-276)||(4544378-4544410)
chr8 (276-304)||(19954256-19954284)
[»] chr7 (7 HSPs)
chr7 (307-354)||(29478171-29478218)
chr7 (311-376)||(6898350-6898415)
chr7 (307-349)||(4579539-4579582)
chr7 (307-349)||(9650988-9651031)
chr7 (307-349)||(23246954-23246997)
chr7 (307-349)||(23866099-23866142)
chr7 (307-349)||(26341230-26341273)
[»] chr3 (17 HSPs)
chr3 (307-366)||(48435832-48435891)
chr3 (322-366)||(4662231-4662275)
chr3 (307-351)||(3657259-3657304)
chr3 (311-360)||(48432444-48432493)
chr3 (240-276)||(4662116-4662152)
chr3 (307-366)||(32474684-32474744)
chr3 (307-349)||(3419024-3419067)
chr3 (307-349)||(8883199-8883242)
chr3 (311-349)||(20507686-20507725)
chr3 (307-349)||(23666144-23666187)
chr3 (307-349)||(24038392-24038435)
chr3 (307-349)||(39775749-39775792)
chr3 (244-274)||(16982930-16982960)
chr3 (308-349)||(23661485-23661527)
chr3 (307-346)||(7571242-7571282)
chr3 (245-277)||(28243633-28243665)
chr3 (244-276)||(48432346-48432378)
[»] scaffold0018 (1 HSPs)
scaffold0018 (307-357)||(171728-171778)
[»] chr2 (13 HSPs)
chr2 (307-360)||(14104622-14104675)
chr2 (241-274)||(44957565-44957598)
chr2 (244-276)||(14104528-14104560)
chr2 (307-349)||(1935014-1935057)
chr2 (307-349)||(10160745-10160788)
chr2 (308-351)||(21523983-21524026)
chr2 (307-349)||(29677412-29677455)
chr2 (307-349)||(30650960-30651003)
chr2 (307-349)||(30658294-30658337)
chr2 (311-366)||(44957441-44957496)
chr2 (244-276)||(13060494-13060526)
chr2 (307-346)||(20711476-20711516)
chr2 (307-366)||(25478301-25478361)
[»] chr6 (11 HSPs)
chr6 (307-366)||(32815067-32815126)
chr6 (307-349)||(35129660-35129702)
chr6 (307-366)||(33687607-33687667)
chr6 (244-276)||(35129566-35129598)
chr6 (307-349)||(2700127-2700170)
chr6 (312-349)||(11614113-11614151)
chr6 (307-349)||(32551540-32551582)
chr6 (244-273)||(29610986-29611015)
chr6 (244-276)||(14775534-14775566)
chr6 (321-349)||(14775630-14775658)
chr6 (321-349)||(29610937-29610965)
[»] scaffold0352 (1 HSPs)
scaffold0352 (307-349)||(7135-7178)
[»] scaffold0182 (1 HSPs)
scaffold0182 (307-349)||(9908-9951)
[»] scaffold0002 (1 HSPs)
scaffold0002 (307-349)||(4105-4148)
[»] chr5 (10 HSPs)
chr5 (307-349)||(3665963-3666006)
chr5 (307-349)||(12103056-12103099)
chr5 (307-349)||(26667303-26667346)
chr5 (307-349)||(26938900-26938943)
chr5 (307-349)||(29167994-29168037)
chr5 (307-349)||(40147926-40147969)
chr5 (323-360)||(18265515-18265552)
chr5 (244-273)||(18265635-18265664)
chr5 (244-276)||(1286390-1286422)
chr5 (307-366)||(36423668-36423728)
[»] scaffold0097 (1 HSPs)
scaffold0097 (307-346)||(15315-15355)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 366
Target Start/End: Complemental strand, 28858423 - 28858067
Alignment:
Q  20 tctcaaataagcttccctattctcttcctcatgtactttcccacaaatcgatctcatttcttctctgcttccctcttagttgaaggctcttcacaatctc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  28858423 tctcaaataagcttccctattctcttcctcatgtactttcccacaaatcgatctcatttcttctgtgcttccctcttagctgaaggctcttcacaatctc 28858324  T
Q  120 tattaactccgtcaaaatcgatcttctctgctttctctccatcactcataacattcaggtttaggtcgtcattgttcaaagttcaaaatgctcag----- 214  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| |||||||         
T  28858323 tattaacttcgtcaaaatcgatcttctctgctttctctccatcactcatagcatttaggtttaggtcgtcactgttcaaagttcaaagtgctcagatctc 28858224  T
Q  215 -----attcggtttgaaaaatgacaactggaaactgttggaacaatagtcaaaattagttaaaaataagagattactaggttgagtcgcagactattttt 309  Q
         |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28858223 ttctaattcggtttgaaaaatgacaacgggaaactgttggaacaatagtcaaaattagttaaaaataagagattactaggttgagtcgcaaactattttt 28858124  T
Q  310 cgtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtccccagaataa 366  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  28858123 cgtggcattgctcaaaattgtgcaagcagactatcaaccacgacgtccccaggataa 28858067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 360
Target Start/End: Complemental strand, 33380984 - 33380931
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtcccca 360  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  33380984 tttcgtgacactgctcaaaattgtgcaagcagactatcaaccacgacgtcccca 33380931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 27761902 - 27761843
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtccccagaataa 366  Q
    |||||||||||||  |||||||||||||||||||||||||||| ||||||||||| ||||    
T  27761902 tttcgtggcactgtccaaaattgtgcaagcagactatcaaccacgacgtccccaggataa 27761843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 12906186 - 12906233
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaaccatgacg 354  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  12906186 tttcgtggcactgcccaaaattgtgcaagcagactatcaaccacgacg 12906233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 2493881 - 2493822
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtccccagaataa 366  Q
    |||||||||||||| |||||||||||||||| ||||||||||| | || |||||| ||||    
T  2493881 tttcgtggcactgcccaaaattgtgcaagcaaactatcaaccacggcgcccccaggataa 2493822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 24159853 - 24159803
Alignment:
Q  316 actgctcaaaattgtgcaagcagactatcaaccatgacgtccccagaataa 366  Q
    ||||| |||||||||||||||||||||||||| | ||||||||||| ||||    
T  24159853 actgcccaaaattgtgcaagcagactatcaacgacgacgtccccaggataa 24159803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 23193381 - 23193349
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaata 276  Q
    |||||||||||||||||||||||||||||||||    
T  23193381 tgttggaacaatagtcaaaattagttaaaaata 23193349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 33381080 - 33381048
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaata 276  Q
    |||||||||||||||||||||||||||||||||    
T  33381080 tgttggaacaatagtcaaaattagttaaaaata 33381048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 354
Target Start/End: Complemental strand, 25661882 - 25661839
Alignment:
Q  311 gtggcactgctcaaaattgtgcaagcagactatcaaccatgacg 354  Q
    |||||||| | |||||||||||||| ||||||||||||||||||    
T  25661882 gtggcactacccaaaattgtgcaagtagactatcaaccatgacg 25661839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 32987276 - 32987319
Alignment:
Q  311 gtggcactgctcaaaattgtgcaagcagactatcaaccatgacg 354  Q
    ||||||||||  |||||||||||||||||||||||| |||||||    
T  32987276 gtggcactgcctaaaattgtgcaagcagactatcaatcatgacg 32987319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 33301244 - 33301201
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaacca 349  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  33301244 tttcgtggcactgcccaaaattgtgcaagacagactatcaacca 33301201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 274
Target Start/End: Original strand, 31063893 - 31063923
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaa 274  Q
    |||||||||||||||||||||||||||||||    
T  31063893 tgttggaacaatagtcaaaattagttaaaaa 31063923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 2493976 - 2493944
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaata 276  Q
    ||||||||||||| |||||||||||||||||||    
T  2493976 tgttggaacaataatcaaaattagttaaaaata 2493944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 18784613 - 18784553
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaaccatgacgtccccagaataa 366  Q
    ||||||||||||||  |||||||||||| ||||||||||||||| | || | |||||||||    
T  18784613 tttcgtggcactgcctaaaattgtgcaaggcagactatcaaccacgccgcctccagaataa 18784553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 36724745 - 36724793
Alignment:
Q  312 tggcactgctcaaaattgtgcaagcagactatcaaccatgacgtcccca 360  Q
    ||||||| | ||||||||||||||||||| |||||||| |||| |||||    
T  36724745 tggcactacccaaaattgtgcaagcagacaatcaaccacgacgccccca 36724793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 20513138 - 20513197
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtccccagaataa 366  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  20513138 tttcgtggcactgctcaaaattgtgcaagcagactatcaaccacgacgttcccaggataa 20513197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 55081759 - 55081707
Alignment:
Q  314 gcactgctcaaaattgtgcaagcagactatcaaccatgacgtccccagaataa 366  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||    
T  55081759 gcactgctcaaaattgtacaagcagactatcaaccatgacgtcctcaggataa 55081707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 274
Target Start/End: Complemental strand, 15020630 - 15020595
Alignment:
Q  239 gaaactgttggaacaatagtcaaaattagttaaaaa 274  Q
    ||||||||||||||||||||||||||||||||||||    
T  15020630 gaaactgttggaacaatagtcaaaattagttaaaaa 15020595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 366
Target Start/End: Complemental strand, 16595993 - 16595938
Alignment:
Q  311 gtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtccccagaataa 366  Q
    |||||||||  |||||||||||||||||||| ||||||| ||||||||||| ||||    
T  16595993 gtggcactgtccaaaattgtgcaagcagactgtcaaccacgacgtccccaggataa 16595938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 33723077 - 33723045
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaata 276  Q
    |||||||||||||||||||||||||||||||||    
T  33723077 tgttggaacaatagtcaaaattagttaaaaata 33723045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 42758819 - 42758759
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaaccatgacgtccccagaataa 366  Q
    |||||||||||||| |||||||||||||| |||||||||||||| | || | |||||||||    
T  42758819 tttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgtcgcctccagaataa 42758759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 55081854 - 55081822
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaata 276  Q
    |||||||||||||||||||||||||||||||||    
T  55081854 tgttggaacaatagtcaaaattagttaaaaata 55081822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 5271483 - 5271440
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaacca 349  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  5271483 tttcgtggcactgcccaaaattgtgcaagacagactatcaacca 5271440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 5928279 - 5928240
Alignment:
Q  311 gtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  5928279 gtggcactgctcaaaattgtgcaaggcagactatcaacca 5928240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 13522056 - 13522013
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaacca 349  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  13522056 tttcgtggcactgcccaaaattgtgcaagacagactatcaacca 13522013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 16421060 - 16421103
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  16421060 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 16421103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 31273552 - 31273595
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaacca 349  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  31273552 tttcgtggcactgcccaaaattgtgcaagacagactatcaacca 31273595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 31765917 - 31765960
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  31765917 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 31765960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 33722983 - 33722924
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtccccagaataa 366  Q
    ||||||| |||||  ||||||||||||||||||| ||| |||| ||||||||||| ||||    
T  33722983 tttcgtgacactgtccaaaattgtgcaagcagaccatcgaccacgacgtccccaggataa 33722924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 37259941 - 37259898
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||| ||||||||||||||| |||||||||||||||    
T  37259941 tttcgtggcactactcaaaattgtgcaaggcagactatcaacca 37259898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 16596094 - 16596062
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaata 276  Q
    |||||||||||||||||||||| ||||||||||    
T  16596094 tgttggaacaatagtcaaaattggttaaaaata 16596062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 2470010 - 2470065
Alignment:
Q  311 gtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtccccagaataa 366  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  2470010 gtggcactgctcaaaattgtgcaagcagactatcaactacgacgtccccaggataa 2470065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 19949850 - 19949909
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtccccagaataa 366  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||| ||||    
T  19949850 tttcgtggcactgcccaaaattgagcaagcagactatcaaccatgacgtcctcaggataa 19949909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 19954308 - 19954356
Alignment:
Q  311 gtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtcccc 359  Q
    |||||||||| ||||||||| |||||||||||||||||| |||||||||    
T  19954308 gtggcactgcccaaaattgtacaagcagactatcaaccacgacgtcccc 19954356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 4544314 - 4544263
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtccc 358  Q
    |||| |||||||||||||||||||||||| |||||||||||||  |||||||    
T  4544314 tttcatggcactgctcaaaattgtgcaagtagactatcaaccactacgtccc 4544263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 34517273 - 34517325
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtcccca 360  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| |||| |||||    
T  34517273 tttcgtggcactg-tcaaaattgtgcaaggagactatcaaccacgacgccccca 34517325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 34517179 - 34517211
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaata 276  Q
    |||||||||||||||||||||||||||||||||    
T  34517179 tgttggaacaatagtcaaaattagttaaaaata 34517211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 15875732 - 15875689
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  15875732 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 15875689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 18876431 - 18876388
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaacca 349  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  18876431 tttcgtggcactgcccaaaattgtgcaagacagactatcaacca 18876388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 31449930 - 31449887
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaacca 349  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  31449930 tttcgtggcactgcccaaaattgtgcaagacagactatcaacca 31449887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 33416578 - 33416621
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaacca 349  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  33416578 tttcgtggcactgcccaaaattgtgcaagacagactatcaacca 33416621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 40125949 - 40125906
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  40125949 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 40125906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 44925987 - 44925944
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  44925987 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 44925944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Original strand, 19954211 - 19954240
Alignment:
Q  247 tggaacaatagtcaaaattagttaaaaata 276  Q
    ||||||||||||||||||||||||||||||    
T  19954211 tggaacaatagtcaaaattagttaaaaata 19954240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 4544410 - 4544378
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaata 276  Q
    |||| ||||||||||||||||||||||||||||    
T  4544410 tgttagaacaatagtcaaaattagttaaaaata 4544378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 304
Target Start/End: Original strand, 19954256 - 19954284
Alignment:
Q  276 aagagattactaggttgagtcgcagacta 304  Q
    |||||||||||||||||||||||||||||    
T  19954256 aagagattactaggttgagtcgcagacta 19954284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 29478218 - 29478171
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaaccatgacg 354  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||    
T  29478218 tttcgtggcactgcccaaaattgtgcaaacagactatcaaccatgacg 29478171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 376
Target Start/End: Complemental strand, 6898415 - 6898350
Alignment:
Q  311 gtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtccccagaataatctacccagc 376  Q
    |||||||||  ||||||||||||||||||||||||||||  |||||||||| |||| | |||||||    
T  6898415 gtggcactgtccaaaattgtgcaagcagactatcaaccacaacgtccccaggataaacaacccagc 6898350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 4579539 - 4579582
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  4579539 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 4579582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 9651031 - 9650988
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaacca 349  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  9651031 tttcgtggcactgcccaaaattgtgcaagacagactatcaacca 9650988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 23246997 - 23246954
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  23246997 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 23246954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 23866099 - 23866142
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaacca 349  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  23866099 tttcgtggcactgcccaaaattgtgcaagacagactatcaacca 23866142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 26341230 - 26341273
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  26341230 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 26341273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 48435891 - 48435832
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtccccagaataa 366  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  48435891 tttcgtgacactgttcaaaatagtgcaagcagactatcaaccacgacgtccccaggataa 48435832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 4662231 - 4662275
Alignment:
Q  322 caaaattgtgcaagcagactatcaaccatgacgtccccagaataa 366  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    
T  4662231 caaaattatgcaagcagactatcaaccatgacgtccccaggataa 4662275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 3657304 - 3657259
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaaccatg 351  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  3657304 tttcgtggcactgttcaaaattgtgcaagacagactatcaaccatg 3657259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 48432444 - 48432493
Alignment:
Q  311 gtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtcccca 360  Q
    |||||||||| |||||||||| || |||||||||||||| ||||||||||    
T  48432444 gtggcactgcccaaaattgtgaaaacagactatcaaccacgacgtcccca 48432493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 4662116 - 4662152
Alignment:
Q  240 aaactgttggaacaatagtcaaaattagttaaaaata 276  Q
    |||||||||||| ||||||||||||||||||||||||    
T  4662116 aaactgttggaataatagtcaaaattagttaaaaata 4662152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 32474744 - 32474684
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaaccatgacgtccccagaataa 366  Q
    |||||||||||||| |||||||||||||| |||||||||||||| | |||| |||| ||||    
T  32474744 tttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgtctccaggataa 32474684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 3419024 - 3419067
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  3419024 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 3419067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 8883199 - 8883242
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaacca 349  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  8883199 tttcgtggcactgcccaaaattgtgcaagacagactatcaacca 8883242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 20507686 - 20507725
Alignment:
Q  311 gtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  20507686 gtggcactgctcaaaattgtgcaaggcagactatcaacca 20507725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 23666187 - 23666144
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  23666187 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 23666144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 24038435 - 24038392
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  24038435 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 24038392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 39775792 - 39775749
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  39775792 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 39775749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 274
Target Start/End: Original strand, 16982930 - 16982960
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaa 274  Q
    |||||||||||||||||||||||||||||||    
T  16982930 tgttggaacaatagtcaaaattagttaaaaa 16982960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 23661527 - 23661485
Alignment:
Q  308 ttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  23661527 ttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 23661485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 7571282 - 7571242
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaa 346  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  7571282 tttcgtggcactgcccaaaattgtgcaagacagactatcaa 7571242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 28243665 - 28243633
Alignment:
Q  245 gttggaacaatagtcaaaattagttaaaaataa 277  Q
    |||||||||| ||||||||||||||||||||||    
T  28243665 gttggaacaaaagtcaaaattagttaaaaataa 28243633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 48432346 - 48432378
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaata 276  Q
    ||||| |||||||||||||||||||||||||||    
T  48432346 tgttgcaacaatagtcaaaattagttaaaaata 48432378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 171778 - 171728
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtcc 357  Q
    ||||||||||||||  ||||||||||||||||||||||||||| |||||||    
T  171778 tttcgtggcactgcctaaaattgtgcaagcagactatcaaccacgacgtcc 171728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 14104622 - 14104675
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtcccca 360  Q
    ||||||| |||||||||||||||||||| || ||||||||||| ||||||||||    
T  14104622 tttcgtgtcactgctcaaaattgtgcaaacaaactatcaaccacgacgtcccca 14104675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 44957598 - 44957565
Alignment:
Q  241 aactgttggaacaatagtcaaaattagttaaaaa 274  Q
    ||||||||||||||||||||||||||||||||||    
T  44957598 aactgttggaacaatagtcaaaattagttaaaaa 44957565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 14104528 - 14104560
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaata 276  Q
    |||||||||||||||||||||||||||||||||    
T  14104528 tgttggaacaatagtcaaaattagttaaaaata 14104560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 1935057 - 1935014
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaacca 349  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  1935057 tttcgtggcactgcccaaaattgtgcaagacagactatcaacca 1935014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 10160788 - 10160745
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  10160788 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 10160745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 351
Target Start/End: Complemental strand, 21524026 - 21523983
Alignment:
Q  308 ttcgtggcactgctcaaaattgtgcaagcagactatcaaccatg 351  Q
    ||||||||||||| |||| |||||||||||||||| ||||||||    
T  21524026 ttcgtggcactgcccaaatttgtgcaagcagactaacaaccatg 21523983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 29677412 - 29677455
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgc-aagcagactatcaacca 349  Q
    |||||||||||||| ||||||||||| |||||||||||||||||    
T  29677412 tttcgtggcactgcccaaaattgtgcaaagcagactatcaacca 29677455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 30650960 - 30651003
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  30650960 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 30651003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 30658294 - 30658337
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||| ||||||||||||||| |||||||||||||||    
T  30658294 tttcgtggcactactcaaaattgtgcaaggcagactatcaacca 30658337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 366
Target Start/End: Complemental strand, 44957496 - 44957441
Alignment:
Q  311 gtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtccccagaataa 366  Q
    ||||||||||  ||||||||||||||||||||||||||| ||| || |||| ||||    
T  44957496 gtggcactgcaaaaaattgtgcaagcagactatcaaccacgacatctccaggataa 44957441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 13060526 - 13060494
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaata 276  Q
    ||||| |||||||||||||||||||||||||||    
T  13060526 tgttgaaacaatagtcaaaattagttaaaaata 13060494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 20711476 - 20711516
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaa 346  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  20711476 tttcgtagcactgctcaaaattgtgcaagacagactatcaa 20711516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 25478361 - 25478301
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaaccatgacgtccccagaataa 366  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||| | || | |||||||||    
T  25478361 tttcgtgacactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccagaataa 25478301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 32815126 - 32815067
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaaccatgacgtccccagaataa 366  Q
    ||||| |||||||| |||||||||||||||||||||||||||| |||  |||||| ||||    
T  32815126 tttcgcggcactgcccaaaattgtgcaagcagactatcaaccacgacacccccagtataa 32815067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 35129660 - 35129702
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaacca 349  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  35129660 tttcatggcactgcccaaaattgtgcaagcagactatcaacca 35129702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 33687667 - 33687607
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaaccatgacgtccccagaataa 366  Q
    |||||||||||||  |||||||||||||| |||||||||||||||| |||| |||| ||||    
T  33687667 tttcgtggcactggccaaaattgtgcaagacagactatcaaccatgccgtctccaggataa 33687607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 35129566 - 35129598
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaata 276  Q
    |||||||||||||||||||||||||||||||||    
T  35129566 tgttggaacaatagtcaaaattagttaaaaata 35129598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 2700170 - 2700127
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaacca 349  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||    
T  2700170 tttcgtggcactgttcaaaattgtgcaagacagactatcaacca 2700127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 11614151 - 11614113
Alignment:
Q  312 tggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  11614151 tggcactgctcaaaattgtgcaaggcagactatcaacca 11614113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 32551582 - 32551540
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaagcagactatcaacca 349  Q
    |||||||  |||| |||||||||||||||||||||||||||||    
T  32551582 tttcgtgaaactgttcaaaattgtgcaagcagactatcaacca 32551540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Complemental strand, 29611015 - 29610986
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaa 273  Q
    ||||||||||||||||||||||||||||||    
T  29611015 tgttggaacaatagtcaaaattagttaaaa 29610986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 14775534 - 14775566
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaata 276  Q
    |||||||| ||||||||||||||||||||||||    
T  14775534 tgttggaataatagtcaaaattagttaaaaata 14775566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 349
Target Start/End: Original strand, 14775630 - 14775658
Alignment:
Q  321 tcaaaattgtgcaagcagactatcaacca 349  Q
    |||||||||||||||||||||||||||||    
T  14775630 tcaaaattgtgcaagcagactatcaacca 14775658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 349
Target Start/End: Complemental strand, 29610965 - 29610937
Alignment:
Q  321 tcaaaattgtgcaagcagactatcaacca 349  Q
    |||||||||||||||||||||||||||||    
T  29610965 tcaaaattgtgcaagcagactatcaacca 29610937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 7135 - 7178
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  7135 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 7178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 9951 - 9908
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  9951 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 9908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 4105 - 4148
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  4105 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 4148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 3665963 - 3666006
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  3665963 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 3666006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 12103056 - 12103099
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  12103056 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 12103099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 26667303 - 26667346
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  26667303 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 26667346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 26938900 - 26938943
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  26938900 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 26938943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 29168037 - 29167994
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaacca 349  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  29168037 tttcgtggcactgcccaaaattgtgcaaggcagactatcaacca 29167994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 40147926 - 40147969
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaacca 349  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  40147926 tttcgtggcactgcccaaaattgtgcaagacagactatcaacca 40147969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 18265552 - 18265515
Alignment:
Q  323 aaaattgtgcaagcagactatcaaccatgacgtcccca 360  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  18265552 aaaattgtgcaatcagactatcaaccacgacgtcccca 18265515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Complemental strand, 18265664 - 18265635
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaa 273  Q
    ||||||||||||||||||||||||||||||    
T  18265664 tgttggaacaatagtcaaaattagttaaaa 18265635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 1286422 - 1286390
Alignment:
Q  244 tgttggaacaatagtcaaaattagttaaaaata 276  Q
    |||||||||||| ||||||||||||||||||||    
T  1286422 tgttggaacaattgtcaaaattagttaaaaata 1286390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 36423668 - 36423728
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaa-gcagactatcaaccatgacgtccccagaataa 366  Q
    ||||| |||||||| ||||||||||||| ||||||||||||||| | || | |||||||||    
T  36423668 tttcgcggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccagaataa 36423728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 15315 - 15355
Alignment:
Q  307 tttcgtggcactgctcaaaattgtgcaag-cagactatcaa 346  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  15315 tttcgtagcactgctcaaaattgtgcaagacagactatcaa 15355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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