View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16725_low_6 (Length: 314)
Name: NF16725_low_6
Description: NF16725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16725_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 226793 - 227073
Alignment:
| Q |
16 |
aaaaacaagtcctacctatttcaatttgacacggtataaatctaaaacaattcgctcaaataacatgtattatctattctgtttaaaacaaatgcccaca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
226793 |
aaaaacaagtcctacctatttcaatttgacacggtataaatctaaaacaattcgctcaaataacatgtattatctattctgtttaaaacaaatgcccaca |
226892 |
T |
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| Q |
116 |
tgagaggacttttttatgacattccttcatagttccaacttcaatgcattataccttttggaaagaattacaaatgctaatgacagacaactaaaaagaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
226893 |
tgagaggacttttttatgacattccttcatagttccaacttcaatgcattataccttttggaaagaattacaaatgctaatgacagacaactaaaaagaa |
226992 |
T |
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| Q |
216 |
tccagtgagacttggcaagtcacatgcccacaaaacttggtcgatttagacctaaaacttcacccatcatttgtatatatt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
226993 |
tccagtgagacttggcaagtcacatgcccacaaaacttggtcgatttagacctaaaacttaacccatcatttgtatatatt |
227073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 703206 - 703486
Alignment:
| Q |
16 |
aaaaacaagtcctacctatttcaatttgacacggtataaatctaaaacaattcgctcaaataacatgtattatctattctgtttaaaacaaatgcccaca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
703206 |
aaaaacaagtcctacctatttcaatttgacacggtataaatctaaaacaattcgctcaaataacatgtattatctattctgtttaaaacaaatgcccaca |
703305 |
T |
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| Q |
116 |
tgagaggacttttttatgacattccttcatagttccaacttcaatgcattataccttttggaaagaattacaaatgctaatgacagacaactaaaaagaa |
215 |
Q |
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| T |
703306 |
tgagaggacttttttatgacattccttcatagttccaacttcaatgcattataccttttggaaagaattacaaatgctaatgacagacaactaaaaagaa |
703405 |
T |
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| Q |
216 |
tccagtgagacttggcaagtcacatgcccacaaaacttggtcgatttagacctaaaacttcacccatcatttgtatatatt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
703406 |
tccagtgagacttggcaagtcacatgcccacaaaacttggtcgatttagacctaaaacttaacccatcatttgtatatatt |
703486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 740416 - 740696
Alignment:
| Q |
16 |
aaaaacaagtcctacctatttcaatttgacacggtataaatctaaaacaattcgctcaaataacatgtattatctattctgtttaaaacaaatgcccaca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
740416 |
aaaaacaagtcctacctatttcaatttgacacggtataaatctaaaacaattcgctcaaataacatgtattatctattctgtttaaaacaaatgcccaca |
740515 |
T |
|
| Q |
116 |
tgagaggacttttttatgacattccttcatagttccaacttcaatgcattataccttttggaaagaattacaaatgctaatgacagacaactaaaaagaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
740516 |
tgagaggacttttttatgacattccttcatagttccaacttcaatgcattataccttttggaaagaattacaaatgctaatgacagacaactaaaaagaa |
740615 |
T |
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| Q |
216 |
tccagtgagacttggcaagtcacatgcccacaaaacttggtcgatttagacctaaaacttcacccatcatttgtatatatt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
740616 |
tccagtgagacttggcaagtcacatgcccacaaaacttggtcgatttagacctaaaacttaacccatcatttgtatatatt |
740696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 864311 - 864591
Alignment:
| Q |
16 |
aaaaacaagtcctacctatttcaatttgacacggtataaatctaaaacaattcgctcaaataacatgtattatctattctgtttaaaacaaatgcccaca |
115 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
864311 |
aaaaacaagtcctacctatttcaatttgacacggtataaatctaaaacaattcgctcaaataacatgtattatctattctgtttaaaacaaatgcccaca |
864410 |
T |
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| Q |
116 |
tgagaggacttttttatgacattccttcatagttccaacttcaatgcattataccttttggaaagaattacaaatgctaatgacagacaactaaaaagaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
864411 |
tgagaggacttttttatgacattccttcatagttccaacttcaatgcattataccttttggaaagaattacaaatgctaatgacagacaactaaaaagaa |
864510 |
T |
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| Q |
216 |
tccagtgagacttggcaagtcacatgcccacaaaacttggtcgatttagacctaaaacttcacccatcatttgtatatatt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
864511 |
tccagtgagacttggcaagtcacatgcccacaaaacttggtcgatttagacctaaaacttaacccatcatttgtatatatt |
864591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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