View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16726_high_2 (Length: 386)
Name: NF16726_high_2
Description: NF16726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16726_high_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 29848509 - 29848893
Alignment:
| Q |
1 |
cataggtccaccttcttctgaagttcattatggacaataccatgtgaagagaacaagctctgttttgaacacaagcatctagtatattttgagcaagtag |
100 |
Q |
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| T |
29848509 |
cataggtccaccttcttctgaagttcattatggacaataccatgtgaagagaacaagctctgttttgaacacaagcatctagtatattttgagcaagtag |
29848608 |
T |
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| Q |
101 |
aagaattataatggacccttgtggtgaaaacaatagtggccatcccatgtgtgtaattttaatgctattatcaatgaatgtctccaatgagaaaatgttg |
200 |
Q |
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| T |
29848609 |
aagaataataatggacccttgtggtgaaaacaatagtggccatcccatgtgtgtaattttaatgctattatcaatgaatgtctccaatgagaaaatgttg |
29848708 |
T |
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| Q |
201 |
gaggcgtctaataaaagccgaagagatacaagacaagtagaatacagtcaaatactgacatgtttggattaaactgcgtgtctaactgaatttggggatg |
300 |
Q |
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| T |
29848709 |
gaggcgtctaataaaagccgaagagatacaagacaagtagaatacagtcaagtactgacatgtttggattaaactgcgtgtctaactgaatttggggatg |
29848808 |
T |
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| Q |
301 |
ttgtgggtaaaaatttaaatgggcaattcagtttgagactctttctatatgtatannnnnnnaagcaaaggtgaatgattaatttg |
386 |
Q |
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| T |
29848809 |
ttgt-ggtaaaaatttaaatgggcaattcagtttgaaactctttctatatgtatatttttttaagcaaaggtgaatgattaatttg |
29848893 |
T |
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