View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16726_low_1 (Length: 526)
Name: NF16726_low_1
Description: NF16726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16726_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Original strand, 40945128 - 40945628
Alignment:
| Q |
19 |
catatgccatagcatatgaaaaatgaatattctggacatggctctcagaagaactaccaacataataaaaatgtctatggtcatactttgaaagaattct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40945128 |
catatgccatagcatatgaaaaatgaatattctggacatgactctcagaagaactaccaacataataaaaatgtctatggtcatactttgaaagaattct |
40945227 |
T |
|
| Q |
119 |
aacaacattatcaacaacaaaaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgtctctgtcacaacccttgat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40945228 |
aacaacattatcaacaacaaaaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgtctctgtcacaacccttgat |
40945327 |
T |
|
| Q |
219 |
atcctcaatgctgacctttgtccttgtcgatttgtataccgaaatttagaagtgtcacctgagattcgaatatcaggtaacccttcgttcctttctgtac |
318 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40945328 |
atcctcaatgctgacctttgtccctgtcgatttgtataccgaaatttagaagtgtcatctgagattcgaatatcaggtaacccttcgttcctttgtgtac |
40945427 |
T |
|
| Q |
319 |
tcactctttgatctaaccaaacaacacctcttgtttgttttggtctccaccatattttgatgtattcttttcttgtattccataaatttgatgaagcagc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40945428 |
tcactctttgatctaaccaaacaacacctcttgtttgttttggtctccaccatattttgatgtattcttttcttgtattccataaatttgatgaagcagc |
40945527 |
T |
|
| Q |
419 |
tatcccaaaaacaatgtgtttcagctcagtatcttgtctttgagccatttgttcaggtgttaaccgaacaacaataggtgatttattttcttgttcttct |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40945528 |
tatcccaaaaacaatgtgtttcagctcagtatcttgtctttgagccatttgttccggtgttaaccgaacaacaataggtgatttattttcttgttcttct |
40945627 |
T |
|
| Q |
519 |
c |
519 |
Q |
| |
|
| |
|
|
| T |
40945628 |
c |
40945628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 22776514 - 22776957
Alignment:
| Q |
19 |
catatgccatagcatatgaaaaatgaatattctggacatggctctcagaagaactaccaacataataaaaatgtctatggtcatactttgaaagaattct |
118 |
Q |
| |
|
|||| ||||||||||| || ||||| || ||||| ||||| |||||||| || || |||||||||||||| || |||| ||||| |||||||||| ||| |
|
|
| T |
22776514 |
cataagccatagcatacgagaaatgtatgttctgaacatgactctcagaggagcttccaacataataaaattgagtatgatcatattttgaaagaactct |
22776613 |
T |
|
| Q |
119 |
aacaacattatcaacaacaaaaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgtctctgtcacaacccttgat |
218 |
Q |
| |
|
||| ||||||||||| | ||| |||||||||||||||||||||| |||||||| ||||| | ||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
22776614 |
aaccacattatcaaccataaacacagtatcatcatctcccatcatgaaccatctcacatcctccaacccaagtttcaatgtctctgtcacaatccttgaa |
22776713 |
T |
|
| Q |
219 |
atcctcaatgctgacctttgtccttgtcgatttgtataccgaaatttagaagtgtcacctgagattcgaatatcaggtaacccttcgttcctttc-tgta |
317 |
Q |
| |
|
||||| || || || || ||||| || ||||| |||||| |||| || |||||| || || ||| ||||||| ||||| |||| || | | ||| |
|
|
| T |
22776714 |
atccttaaagcagatctctgtccctgacgattcgtatacttaaatctactagtgtcccccgaaatttgaatatctggtaaatcttc-atcatcacgtgtc |
22776812 |
T |
|
| Q |
318 |
ctcactctttgatctaaccaaacaacacctcttgtttgttttggtctccaccatattttgatgtattcttttcttgtattccataaatttgatgaagcag |
417 |
Q |
| |
|
||||||||||||| | ||| || || |||||||||| || || ||||||||| || |||||||| |||||| | ||||| |||||||||||||| | |
|
|
| T |
22776813 |
ttcactctttgatccatccacaccacccctcttgtttcattatgtttccaccataccttaatgtattcctttcttatgttccacaaatttgatgaagccg |
22776912 |
T |
|
| Q |
418 |
ctatcccaaaaacaatgtgtttcagctcagtatcttgtctttgag |
462 |
Q |
| |
|
|||||||||||||||||||||| | ||| || ||||||||||||| |
|
|
| T |
22776913 |
ctatcccaaaaacaatgtgtttgatctctgtgtcttgtctttgag |
22776957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University