View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16726_low_3 (Length: 338)
Name: NF16726_low_3
Description: NF16726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16726_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 40945128 - 40945434
Alignment:
| Q |
19 |
catatgccatagcatatgaaaaatgaatattctggacatggctctcagaagaactaccaacataataaaaatgtctatggtcatactttgaaagaattct |
118 |
Q |
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| T |
40945128 |
catatgccatagcatatgaaaaatgaatattctggacatgactctcagaagaactaccaacataataaaaatgtctatggtcatactttgaaagaattct |
40945227 |
T |
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| Q |
119 |
aacaacattatcaacaacaaaaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgtctctgtcacaacccttgat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40945228 |
aacaacattatcaacaacaaaaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgtctctgtcacaacccttgat |
40945327 |
T |
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| Q |
219 |
atcctcaatgctgacctttgtccttgtcgatttgtataccgaaatttagaagtgtcacctgagattcgaatatcaggtaacccttcgttcctttctgtac |
318 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40945328 |
atcctcaatgctgacctttgtccctgtcgatttgtataccgaaatttagaagtgtcatctgagattcgaatatcaggtaacccttcgttcctttgtgtac |
40945427 |
T |
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| Q |
319 |
tcactct |
325 |
Q |
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||||||| |
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| T |
40945428 |
tcactct |
40945434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 22776514 - 22776793
Alignment:
| Q |
19 |
catatgccatagcatatgaaaaatgaatattctggacatggctctcagaagaactaccaacataataaaaatgtctatggtcatactttgaaagaattct |
118 |
Q |
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|||| ||||||||||| || ||||| || ||||| ||||| |||||||| || || |||||||||||||| || |||| ||||| |||||||||| ||| |
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| T |
22776514 |
cataagccatagcatacgagaaatgtatgttctgaacatgactctcagaggagcttccaacataataaaattgagtatgatcatattttgaaagaactct |
22776613 |
T |
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| Q |
119 |
aacaacattatcaacaacaaaaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgtctctgtcacaacccttgat |
218 |
Q |
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||| ||||||||||| | ||| |||||||||||||||||||||| |||||||| ||||| | ||| ||||| ||||||||||||||||||| |||||| |
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| T |
22776614 |
aaccacattatcaaccataaacacagtatcatcatctcccatcatgaaccatctcacatcctccaacccaagtttcaatgtctctgtcacaatccttgaa |
22776713 |
T |
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| Q |
219 |
atcctcaatgctgacctttgtccttgtcgatttgtataccgaaatttagaagtgtcacctgagattcgaatatcaggtaa |
298 |
Q |
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||||| || || || || ||||| || ||||| |||||| |||| || |||||| || || ||| ||||||| ||||| |
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| T |
22776714 |
atccttaaagcagatctctgtccctgacgattcgtatacttaaatctactagtgtcccccgaaatttgaatatctggtaa |
22776793 |
T |
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