View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16726_low_7 (Length: 217)

Name: NF16726_low_7
Description: NF16726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16726_low_7
NF16726_low_7
[»] chr7 (11 HSPs)
chr7 (1-215)||(31691097-31691299)
chr7 (35-74)||(42656459-42656498)
chr7 (41-74)||(2999141-2999174)
chr7 (1-30)||(22759067-22759096)
chr7 (1-30)||(27708934-27708963)
chr7 (35-72)||(28178913-28178950)
chr7 (1-30)||(28702640-28702669)
chr7 (20-74)||(12110292-12110343)
chr7 (2-30)||(31832193-31832221)
chr7 (42-74)||(39591554-39591586)
chr7 (2-30)||(39630264-39630292)
[»] chr2 (9 HSPs)
chr2 (32-73)||(33197327-33197368)
chr2 (35-74)||(17952788-17952827)
chr2 (35-74)||(31461382-31461421)
chr2 (35-74)||(32098395-32098434)
chr2 (27-74)||(40837515-40837562)
chr2 (1-30)||(6772695-6772724)
chr2 (1-29)||(10285759-10285787)
chr2 (42-74)||(29633023-29633055)
chr2 (42-74)||(33576681-33576713)
[»] chr5 (14 HSPs)
chr5 (41-74)||(10280663-10280696)
chr5 (35-74)||(7096214-7096253)
chr5 (35-74)||(37063161-37063200)
chr5 (42-115)||(912696-912768)
chr5 (41-74)||(10303751-10303784)
chr5 (1-30)||(14257348-14257377)
chr5 (41-74)||(14295456-14295489)
chr5 (41-74)||(28586853-28586886)
chr5 (1-30)||(30845204-30845233)
chr5 (41-74)||(35095870-35095903)
chr5 (1-30)||(36638644-36638673)
chr5 (42-74)||(29117017-29117049)
chr5 (41-73)||(29590828-29590860)
chr5 (42-74)||(35135749-35135781)
[»] chr1 (10 HSPs)
chr1 (41-74)||(39777613-39777646)
chr1 (1-74)||(14737792-14737870)
chr1 (32-74)||(46499941-46499983)
chr1 (35-73)||(50319236-50319274)
chr1 (1-30)||(6933117-6933146)
chr1 (1-30)||(32555706-32555735)
chr1 (1-30)||(48146173-48146202)
chr1 (42-74)||(15360845-15360877)
chr1 (42-74)||(36641826-36641858)
chr1 (42-74)||(49517021-49517053)
[»] chr8 (11 HSPs)
chr8 (1-74)||(26820113-26820182)
chr8 (1-74)||(12224986-12225056)
chr8 (35-74)||(14482146-14482185)
chr8 (35-74)||(31915356-31915395)
chr8 (35-74)||(39392748-39392787)
chr8 (42-76)||(29699205-29699239)
chr8 (1-30)||(31167868-31167897)
chr8 (42-74)||(8799356-8799388)
chr8 (42-74)||(11119086-11119118)
chr8 (42-74)||(40728505-40728537)
chr8 (36-76)||(44348432-44348472)
[»] chr3 (9 HSPs)
chr3 (34-74)||(49587003-49587043)
chr3 (35-74)||(1395615-1395654)
chr3 (1-74)||(20192693-20192763)
chr3 (35-73)||(905058-905096)
chr3 (1-30)||(4534499-4534528)
chr3 (1-30)||(8933670-8933699)
chr3 (1-30)||(20874458-20874487)
chr3 (42-74)||(26990685-26990717)
chr3 (42-74)||(54775079-54775111)
[»] scaffold0590 (1 HSPs)
scaffold0590 (35-74)||(1161-1200)
[»] scaffold0275 (1 HSPs)
scaffold0275 (35-74)||(2775-2814)
[»] chr4 (10 HSPs)
chr4 (35-70)||(30338683-30338718)
chr4 (35-74)||(51044546-51044585)
chr4 (43-73)||(9319283-9319313)
chr4 (36-74)||(10192229-10192267)
chr4 (41-74)||(4071832-4071865)
chr4 (1-30)||(7730513-7730542)
chr4 (41-74)||(20936089-20936122)
chr4 (1-30)||(41162211-41162240)
chr4 (20-70)||(6364081-6364128)
chr4 (42-74)||(19422369-19422401)
[»] chr6 (5 HSPs)
chr6 (32-73)||(281936-281977)
chr6 (1-30)||(2023787-2023816)
chr6 (41-74)||(30865432-30865465)
chr6 (42-74)||(5328925-5328957)
chr6 (42-74)||(24836286-24836318)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 31691299 - 31691097
Alignment:
Q  1 tttggataaacaacttaattaagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaaattcgattccacatgagctataagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||            ||||||||||||||||||||||||||||||||    
T  31691299 tttggataaacaacttaattaagcacttatgatctataacctatttctagaacaaa------------gtcaaaattcgattccacatgagctataagtt 31691212  T
Q  101 gtttttataatctattctagaaagcttgtggnnnnnnntctgaacttaccgctgagaaatccgcctcgaagtctatctgagttttcttcaatgaagaact 200  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31691211 gtttttataatctattctagaaagcttgtggaaaaaaatctgaacttaccgctgagaaatccgcctcgaagtctatctgagttttcttcaatgaagaact 31691112  T
Q  201 atcagcagtcctatg 215  Q
    |||||||||||||||    
T  31691111 atcagcagtcctatg 31691097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 42656459 - 42656498
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  42656459 tataagctatttctataacaaaagataaaataaagtcaaa 42656498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 2999141 - 2999174
Alignment:
Q  41 ctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||||||||||||||||||| ||||||||||||    
T  2999141 ctatttctataacaaaagataaaataaagtcaaa 2999174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 22759067 - 22759096
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  22759067 tttggataaacaacttaattaagcacttat 22759096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 27708963 - 27708934
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  27708963 tttggataaacaacttaattaagcacttat 27708934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 28178913 - 28178950
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtca 72  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  28178913 tataagctatttctataacaaaagataaaataaagtca 28178950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 28702640 - 28702669
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  28702640 tttggataaacaacttaattaagcacttat 28702669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 12110292 - 12110343
Alignment:
Q  20 taagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||   ||||||||||||||| ||| |||||| ||||||||||||    
T  12110292 taagcacttatga---ataacctatttctattacacaagataaaataaagtcaaa 12110343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 31832193 - 31832221
Alignment:
Q  2 ttggataaacaacttaattaagcacttat 30  Q
    |||||||||||||||||||||||||||||    
T  31832193 ttggataaacaacttaattaagcacttat 31832221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 39591586 - 39591554
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||| ||||||||||||    
T  39591586 tatttctataacaaaagataaaataaagtcaaa 39591554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 39630264 - 39630292
Alignment:
Q  2 ttggataaacaacttaattaagcacttat 30  Q
    |||||||||||||||||||||||||||||    
T  39630264 ttggataaacaacttaattaagcacttat 39630292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 33197368 - 33197327
Alignment:
Q  32 atctataacctatttctataacaaaagatagaataaagtcaa 73  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  33197368 atctataagctatttctataacaaaagatagaataaagtcaa 33197327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 17952827 - 17952788
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  17952827 tataagctatttctataacaaaagataaaataaagtcaaa 17952788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 31461382 - 31461421
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  31461382 tataagctatttctataacaaaagataaaataaagtcaaa 31461421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 32098434 - 32098395
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  32098434 tataagctatttctataacaaaagataaaataaagtcaaa 32098395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 40837562 - 40837515
Alignment:
Q  27 ttatgatctataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||||| ||||| ||||||||||||||||||||| | ||||||||||    
T  40837562 ttatgatgtataagctatttctataacaaaagataaattaaagtcaaa 40837515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 6772724 - 6772695
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  6772724 tttggataaacaacttaattaagcacttat 6772695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10285759 - 10285787
Alignment:
Q  1 tttggataaacaacttaattaagcactta 29  Q
    |||||||||||||||||||||||||||||    
T  10285759 tttggataaacaacttaattaagcactta 10285787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 29633023 - 29633055
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||| ||||||||||||||||    
T  29633023 tatttctataacaaaaaatagaataaagtcaaa 29633055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 33576713 - 33576681
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||| ||||||||||||    
T  33576713 tatttctataacaaaagatacaataaagtcaaa 33576681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 10280696 - 10280663
Alignment:
Q  41 ctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||||||||||||||||||||||||||||||||    
T  10280696 ctatttctataacaaaagatagaataaagtcaaa 10280663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 7096253 - 7096214
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  7096253 tataagctatttctataacaaaagataaaataaagtcaaa 7096214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 37063200 - 37063161
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  37063200 tataaactatttctataacaaaagataaaataaagtcaaa 37063161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 912768 - 912696
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaaattcgattccacatgagctataagttgtttttataatctat 115  Q
    ||||||||||||| || ||| ||||||||||||||| | || || || ||| ||||||||||||||||| ||||    
T  912768 tatttctataacacaatataaaataaagtcaaaatt-gttttcatataagcaataagttgtttttataaactat 912696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 10303751 - 10303784
Alignment:
Q  41 ctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||||||||||||||||||| ||||||||||||    
T  10303751 ctatttctataacaaaagataaaataaagtcaaa 10303784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 14257348 - 14257377
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  14257348 tttggataaacaacttaattaagcacttat 14257377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 14295456 - 14295489
Alignment:
Q  41 ctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||||||||||||||||||| ||||||||||||    
T  14295456 ctatttctataacaaaagataaaataaagtcaaa 14295489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 28586886 - 28586853
Alignment:
Q  41 ctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||||||||||||||||||| ||||||||||||    
T  28586886 ctatttctataacaaaagataaaataaagtcaaa 28586853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 30845204 - 30845233
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  30845204 tttggataaacaacttaattaagcacttat 30845233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 35095903 - 35095870
Alignment:
Q  41 ctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||||||||||||||||||| ||||||||||||    
T  35095903 ctatttctataacaaaagataaaataaagtcaaa 35095870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 36638644 - 36638673
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  36638644 tttggataaacaacttaattaagcacttat 36638673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 29117049 - 29117017
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||| ||||||||||||    
T  29117049 tatttctataacaaaagataaaataaagtcaaa 29117017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 29590860 - 29590828
Alignment:
Q  41 ctatttctataacaaaagatagaataaagtcaa 73  Q
    ||||||||||||||||||||| |||||||||||    
T  29590860 ctatttctataacaaaagataaaataaagtcaa 29590828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 35135781 - 35135749
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||| ||||||||||||    
T  35135781 tatttctataacaaaagataaaataaagtcaaa 35135749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 39777613 - 39777646
Alignment:
Q  41 ctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||||||||||||||||||||||||||||||||    
T  39777613 ctatttctataacaaaagatagaataaagtcaaa 39777646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 14737870 - 14737792
Alignment:
Q  1 tttggataaacaacttaattaagcacttatgatctat-----aacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||||||| || ||||||||||||||||| || |||     ||  |||||||||||||||||||| ||||||||||||    
T  14737870 tttggataagcagcttaattaagcacttatcatatatgtgctaagttatttctataacaaaagataaaataaagtcaaa 14737792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 46499983 - 46499941
Alignment:
Q  32 atctataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||| |||||||||||| |||||||| ||||||||||||    
T  46499983 atctataagctatttctataagaaaagataaaataaagtcaaa 46499941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 50319236 - 50319274
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtcaa 73  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  50319236 tataagctatttctataacaaaagataaaataaagtcaa 50319274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 6933146 - 6933117
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  6933146 tttggataaacaacttaattaagcacttat 6933117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 32555706 - 32555735
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  32555706 tttggataaacaacttaattaagcacttat 32555735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 48146202 - 48146173
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  48146202 tttggataaacaacttaattaagcacttat 48146173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 15360845 - 15360877
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||| ||||||||||||    
T  15360845 tatttctataacaaaagataaaataaagtcaaa 15360877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 36641826 - 36641858
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||| ||||||||||||    
T  36641826 tatttctataacaaaagataaaataaagtcaaa 36641858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 49517021 - 49517053
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||| ||||||||||||    
T  49517021 tatttctataacaaaagataaaataaagtcaaa 49517053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 26820113 - 26820182
Alignment:
Q  1 tttggataaacaacttaattaagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||||||||||||| |||||||| ||||     |||||  |||||||||||||||||||| ||||||||||||    
T  26820113 tttggataaacaactcaattaagcgcttag----tataagttatttctataacaaaagataaaataaagtcaaa 26820182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 12225056 - 12224986
Alignment:
Q  1 tttggataaacaacttaattaagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||||||  ||||||   |||||  ||||||||  |||||||||| ||||||||||||    
T  12225056 tttggataaacaacttaattaagagcttatg---tataagttatttctaagacaaaagataaaataaagtcaaa 12224986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 14482146 - 14482185
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  14482146 tataaactatttctataacaaaagataaaataaagtcaaa 14482185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 31915395 - 31915356
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  31915395 tataagctatatctataacaaaagatagaataaagtcaaa 31915356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 39392787 - 39392748
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  39392787 tataaactatttctataacaaaagataaaataaagtcaaa 39392748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 29699205 - 29699239
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaaat 76  Q
    |||||||||||||||||||| ||||||||||||||    
T  29699205 tatttctataacaaaagataaaataaagtcaaaat 29699239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 31167868 - 31167897
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  31167868 tttggataaacaacttaattaagcacttat 31167897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 8799356 - 8799388
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||| ||||||||||||    
T  8799356 tatttctataacaaaagataaaataaagtcaaa 8799388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 11119118 - 11119086
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||| ||||||||||||    
T  11119118 tatttctataacaaaagataaaataaagtcaaa 11119086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 40728537 - 40728505
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||| ||||||||||||    
T  40728537 tatttctataacaaaagataaaataaagtcaaa 40728505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 44348432 - 44348472
Alignment:
Q  36 ataacctatttctataacaaaagatagaataaagtcaaaat 76  Q
    |||| ||||||||||||||||||||  ||||||||||||||    
T  44348432 ataagctatttctataacaaaagatgtaataaagtcaaaat 44348472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 49587043 - 49587003
Alignment:
Q  34 ctataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  49587043 ctataagctatttctataacaaaagataaaataaagtcaaa 49587003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 1395615 - 1395654
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  1395615 tataagctatttctataacaaaagataaaataaagtcaaa 1395654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 20192763 - 20192693
Alignment:
Q  1 tttggataaacaacttaattaagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||| || |||||||  ||||||   ||||| |||||| |||||||||||||| ||||||||||||    
T  20192763 tttggataaacagctcaattaagtgcttatg---tataagctatttatataacaaaagataaaataaagtcaaa 20192693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 905096 - 905058
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtcaa 73  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  905096 tataagctatttctataacaaaagataaaataaagtcaa 905058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 4534528 - 4534499
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  4534528 tttggataaacaacttaattaagcacttat 4534499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 8933670 - 8933699
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  8933670 tttggataaacaacttaattaagcacttat 8933699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 20874487 - 20874458
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  20874487 tttggataaacaacttaattaagcacttat 20874458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 26990685 - 26990717
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||| ||||||||||||    
T  26990685 tatttctataacaaaagataaaataaagtcaaa 26990717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 54775079 - 54775111
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||| ||||||||||||    
T  54775079 tatttctataacaaaagataaaataaagtcaaa 54775111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 1200 - 1161
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  1200 tataagctatttctataacaaaagataaaataaagtcaaa 1161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 2775 - 2814
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  2775 tataagctatttctataacaaaagataaaataaagtcaaa 2814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 30338718 - 30338683
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagt 70  Q
    ||||| ||||||||||||||||||||||||||||||    
T  30338718 tataaactatttctataacaaaagatagaataaagt 30338683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 51044585 - 51044546
Alignment:
Q  35 tataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  51044585 tataagctatttctataacaaaagataaaataaagtcaaa 51044546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 73
Target Start/End: Complemental strand, 9319313 - 9319283
Alignment:
Q  43 atttctataacaaaagatagaataaagtcaa 73  Q
    |||||||||||||||||||||||||||||||    
T  9319313 atttctataacaaaagatagaataaagtcaa 9319283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 10192229 - 10192267
Alignment:
Q  36 ataacctatttctataacaaaagatagaataaagtcaaa 74  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  10192229 ataaactatttttataacaaaagatagaataaagtcaaa 10192267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 4071832 - 4071865
Alignment:
Q  41 ctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||||||||||||||||||| ||||||||||||    
T  4071832 ctatttctataacaaaagataaaataaagtcaaa 4071865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 7730513 - 7730542
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  7730513 tttggataaacaacttaattaagcacttat 7730542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 20936122 - 20936089
Alignment:
Q  41 ctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||||||||||||||||||| ||||||||||||    
T  20936122 ctatttctataacaaaagataaaataaagtcaaa 20936089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 41162240 - 41162211
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  41162240 tttggataaacaacttaattaagcacttat 41162211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 6364081 - 6364128
Alignment:
Q  20 taagcacttatgatctataacctatttctataacaaaagatagaataaagt 70  Q
    ||||||||||||   ||||| ||||||||||||||||||||| ||||||||    
T  6364081 taagcacttatg---tataagctatttctataacaaaagataaaataaagt 6364128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 19422369 - 19422401
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||| ||||||||||||    
T  19422369 tatttctataacaaaagatataataaagtcaaa 19422401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 281977 - 281936
Alignment:
Q  32 atctataacctatttctataacaaaagatagaataaagtcaa 73  Q
    |||||||| ||||| ||||||||||||||| |||||||||||    
T  281977 atctataagctattcctataacaaaagataaaataaagtcaa 281936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2023816 - 2023787
Alignment:
Q  1 tttggataaacaacttaattaagcacttat 30  Q
    ||||||||||||||||||||||||||||||    
T  2023816 tttggataaacaacttaattaagcacttat 2023787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 30865432 - 30865465
Alignment:
Q  41 ctatttctataacaaaagatagaataaagtcaaa 74  Q
    ||||||||||||||||||||| ||||||||||||    
T  30865432 ctatttctataacaaaagataaaataaagtcaaa 30865465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 5328925 - 5328957
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||| ||||||||||||    
T  5328925 tatttctataacaaaagataaaataaagtcaaa 5328957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 24836318 - 24836286
Alignment:
Q  42 tatttctataacaaaagatagaataaagtcaaa 74  Q
    |||||||||||||||||||| ||||||||||||    
T  24836318 tatttctataacaaaagataaaataaagtcaaa 24836286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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