View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16726_low_8 (Length: 204)
Name: NF16726_low_8
Description: NF16726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16726_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 39369834 - 39369908
Alignment:
| Q |
115 |
tttctgttaattgattgtaggaatgcataacttccaaaggttacgactttttacgaatggatggcacaacaatat |
189 |
Q |
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| T |
39369834 |
tttctgttaattgattgtaggaatgcataacttccaaaggttacgactttttacgaatggatggcacaacaatat |
39369908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 61 - 201
Target Start/End: Original strand, 39355771 - 39355909
Alignment:
| Q |
61 |
attccttgcaccattttattattgtgtatttctatatgagagttgattcaaaagtttctgttaattgattgtaggaatgcataacttccaaaggttacga |
160 |
Q |
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| T |
39355771 |
attccttgcaccattttattgctgtgt--ttcagtatgagagaatcttctaaggtttctgttaatttattataggaatgcataacatctcaaggttatga |
39355868 |
T |
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| Q |
161 |
ctttttacgaatggatggcacaacaatatcctgtgacagaa |
201 |
Q |
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| T |
39355869 |
ctttttacgaattgatggcacaacaaaatcatgtgacagaa |
39355909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 39369783 - 39369814
Alignment:
| Q |
1 |
tctataaaattttaataatttgaggtcatttt |
32 |
Q |
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| T |
39369783 |
tctataaaattttaataatttgaggtcatttt |
39369814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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