View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16727_high_10 (Length: 419)

Name: NF16727_high_10
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16727_high_10
NF16727_high_10
[»] chr1 (16 HSPs)
chr1 (17-419)||(13271964-13272366)
chr1 (17-203)||(12963332-12963518)
chr1 (23-208)||(13086696-13086881)
chr1 (294-419)||(13086485-13086610)
chr1 (57-199)||(13080347-13080489)
chr1 (17-166)||(13243966-13244115)
chr1 (294-419)||(13244213-13244335)
chr1 (53-166)||(19278625-19278738)
chr1 (373-419)||(12963679-12963725)
chr1 (349-411)||(19278912-19278974)
chr1 (342-419)||(13069916-13069993)
chr1 (347-419)||(13064958-13065030)
chr1 (349-411)||(13080609-13080671)
chr1 (342-419)||(13101375-13101452)
chr1 (347-419)||(13007575-13007647)
chr1 (125-165)||(13064754-13064794)


Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Complemental strand, 13272366 - 13271964
Alignment:
Q  17 aattgtcttccttacaagttcaatgagcttcgagaaattgcttatgtaaaagctatttctgtgattgaggatacattattgcataggcactctgttccaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13272366 aattgtcttccttacaagttcaatgagcttcgagaaattgcttatgtaaaagctatttctgtgattgaggatacattattgcataggcactctgttccaa 13272267  T
Q  117 aatgtgtttggaagctacagaaatggctacatattggtcaagagaagaagaatagtgtagctcaagaaaatattcatcaattcttgttcaaaatgataat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||    
T  13272266 aatgtgtttggaagctacagaaatggctacatattggtcaagagaagaagaacagtatagctcaaaaaaatattcatcaattcttgttcaaaatgataat 13272167  T
Q  217 gcattcaaaatatgatgatgataaaagtagattaaaaaccaatgaagatgttgcggaaattcaacctgttggcatgttaaaagcactaatgaaagaagga 316  Q
    |||||| |||||||||||  ||||||||||||||||||||| |||||||||||| |||||||| ||||||||  |||||||| |||||||||| |||||     
T  13272166 gcattcgaaatatgatgaaaataaaagtagattaaaaaccagtgaagatgttgctgaaattcatcctgttggtgtgttaaaaccactaatgaaggaaggc 13272067  T
Q  317 ttgggaaaggaagaaatgaatgaaaatgaaaagtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagtt 416  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13272066 ttgggaaaggaagaaacgaatgaaaatgaaaagtatattagagacactgcattcactctcttggctgcaggaaatggaacagttagttcaggtctaagtt 13271967  T
Q  417 ggt 419  Q
    |||    
T  13271966 ggt 13271964  T

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Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 12963332 - 12963518
Alignment:
Q  17 aattgtcttccttacaagttcaatgagcttcgagaaattgcttatgtaaaagctatttctgtgattgaggatacattattgcataggcactctgttccaa 116  Q
    ||||| ||||||||||||||||||||| ||  ||| ||||| ||||||||||||||||||||||||||||||||  |||||  |||||||| | ||||||    
T  12963332 aattgccttccttacaagttcaatgagttttcagatattgcgtatgtaaaagctatttctgtgattgaggatacgatattgtttaggcactatattccaa 12963431  T
Q  117 aatgtgtttggaagctacagaaatggctacatattggtcaagagaagaagaatagtgtagctcaagaaaatattcatcaattcttgt 203  Q
    ||||| ||||||||||||| ||||||||||| |||||||||||||||||||| | | |||||||||||||||||||| |||||||||    
T  12963432 aatgtttttggaagctacaaaaatggctacaaattggtcaagagaagaagaacaatatagctcaagaaaatattcataaattcttgt 12963518  T

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Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 13086881 - 13086696
Alignment:
Q  23 cttccttacaagttcaatgagcttcgagaaattgcttatgtaaaagctatttctgtgattgaggatacattattgcataggcactctgttccaaaatgtg 122  Q
    ||||||||||||||||||||  | | ||| |||||| ||||||||||||||||  | |||||||||||| |||||  |||||||| | |||||||||       
T  13086881 cttccttacaagttcaatgaattaccagagattgctcatgtaaaagctatttcgattattgaggatacaatattgtctaggcactatattccaaaatact 13086782  T
Q  123 tttggaagctacagaaatggctacatattggtcaagagaagaagaatagtgtagctcaagaaaatattcatcaattcttgttcaaa 208  Q
    |||||||| |||| ||||||||||| |||||||||||||||||| | |  ||||||||||||||| |||| |||||||||| ||||    
T  13086781 tttggaagttacaaaaatggctacaaattggtcaagagaagaagtacaaggtagctcaagaaaatcttcaccaattcttgtccaaa 13086696  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 294 - 419
Target Start/End: Complemental strand, 13086610 - 13086485
Alignment:
Q  294 taaaagcactaatgaaagaaggattgggaaaggaagaaatgaatgaaaatgaaaagtatattagagacactgcattcactctcttggcagcaggaaatgg 393  Q
    |||| ||||| ||||| ||||| |||||||| || ||||||  ||||| ||| ||||||||||||||||||||||||| |||||| || ||||||| |||    
T  13086610 taaaggcactgatgaaggaaggcttgggaaatgaggaaatggttgaaattgataagtatattagagacactgcattcaatctcttagctgcaggaagtgg 13086511  T
Q  394 aacagttagttcaggtctaagttggt 419  Q
    ||||||||||||||||||||||||||    
T  13086510 aacagttagttcaggtctaagttggt 13086485  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 57 - 199
Target Start/End: Original strand, 13080347 - 13080489
Alignment:
Q  57 cttatgtaaaagctatttctgtgattgaggatacattattgcataggcactctgttccaaaatgtgtttggaagctacagaaatggctacatattggtca 156  Q
    |||||||||||||||| ||||||| |||||||    | |||   ||||||| | ||||||||||| ||||||||||||| |||||| |||| ||||||||    
T  13080347 cttatgtaaaagctatatctgtgactgaggatgtgatcttgtcgaggcactatattccaaaatgtatttggaagctacaaaaatggttacagattggtca 13080446  T
Q  157 agagaagaagaatagtgtagctcaagaaaatattcatcaattc 199  Q
    |||||||||| | |  |||||  |||||||| |||||||||||    
T  13080447 agagaagaagtacaaggtagcaaaagaaaatcttcatcaattc 13080489  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 13243966 - 13244115
Alignment:
Q  17 aattgtcttccttacaagttcaatgagcttcgagaaattgcttatgtaaaagctatttctgtgattgaggatacattattgcataggcactctgttccaa 116  Q
    ||||| ||||||||||||| ||||||| |   ||| |||||||||| ||||||| ||  |||  |||||||||   |||||| ||| |||| | |||| |    
T  13243966 aattgccttccttacaagtgcaatgagttatcagatattgcttatgaaaaagcttttagtgtacttgaggatatggtattgcgtagacactatattccga 13244065  T
Q  117 aatgtgtttggaagctacagaaatggctacatattggtcaagagaagaag 166  Q
    ||||| ||||||||||||| || |||||||| ||||||| ||||||||||    
T  13244066 aatgtatttggaagctacaaaagtggctacaaattggtctagagaagaag 13244115  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 419
Target Start/End: Original strand, 13244213 - 13244335
Alignment:
Q  294 taaaagcactaatgaaagaaggattgggaaaggaagaaatgaatgaaaatgaaaagtatattagagacactgcattcactctcttggcagcaggaaatgg 393  Q
    |||||| ||||||||| ||| ||||||||||||  |||||||  |   |||| |||||||| |||||||||||  | | |||||| |  |||||||||||    
T  13244213 taaaagaactaatgaaggaaagattgggaaagggggaaatgatcg---atgagaagtatatcagagacactgcggtaaatctcttcggtgcaggaaatgg 13244309  T
Q  394 aacagttagttcaggtctaagttggt 419  Q
    |||| |||||||||||||||||||||    
T  13244310 aacaattagttcaggtctaagttggt 13244335  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 19278625 - 19278738
Alignment:
Q  53 attgcttatgtaaaagctatttctgtgattgaggatacattattgcataggcactctgttccaaaatgtgtttggaagctacagaaatggctacatattg 152  Q
    |||||||||||||||||| ||  |||  ||||||||    ||||| |||| |||| | | ||||||||| |||||||||| || || |||||||| ||||    
T  19278625 attgcttatgtaaaagctgttagtgtccttgaggatttgctattgtatagacactatatgccaaaatgtatttggaagctgcaaaagtggctacacattg 19278724  T
Q  153 gtcaagagaagaag 166  Q
    ||||||||||||||    
T  19278725 gtcaagagaagaag 19278738  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 12963679 - 12963725
Alignment:
Q  373 tctcttggcagcaggaaatggaacagttagttcaggtctaagttggt 419  Q
    |||||| || ||||||| |||||||||||||||||||||||||||||    
T  12963679 tctcttagctgcaggaagtggaacagttagttcaggtctaagttggt 12963725  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 411
Target Start/End: Original strand, 19278912 - 19278974
Alignment:
Q  349 gtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtct 411  Q
    ||||||||||||||||||  ||| ||||||||| ||||| ||||||||| ||||||| |||||    
T  19278912 gtatattagagacactgctctcaatctcttggctgcaggtaatggaacaattagttcgggtct 19278974  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 419
Target Start/End: Original strand, 13069916 - 13069993
Alignment:
Q  342 atgaaaagtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggt 419  Q
    |||| |||||| ||||||||| |||| || |||||||   |||||||||||| ||||||| ||||||||| |||||||    
T  13069916 atgagaagtatcttagagacaatgcactctctctctttttagcaggaaatggcacagttacttcaggtctcagttggt 13069993  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 419
Target Start/End: Original strand, 13064958 - 13065030
Alignment:
Q  347 aagtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggt 419  Q
    |||||| |||||||||||||| ||| ||| |||  ||| ||||| || ||||||||||||||||| |||||||    
T  13064958 aagtatcttagagacactgcagtcaatctattgttagcgggaaacggcacagttagttcaggtctcagttggt 13065030  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 411
Target Start/End: Original strand, 13080609 - 13080671
Alignment:
Q  349 gtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtct 411  Q
    |||||||||||| ||| || ||| ||||||||  ||||||||||||||| ||||| |||||||    
T  13080609 gtatattagagatactacaatcaatctcttggttgcaggaaatggaacaattagtacaggtct 13080671  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 419
Target Start/End: Complemental strand, 13101452 - 13101375
Alignment:
Q  342 atgaaaagtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggt 419  Q
    |||| |||||| ||||||||| || | ||||||||||   ||||||||||||  |||||||||||| ||| |||||||    
T  13101452 atgagaagtatcttagagacaatgtaatcactctctttttagcaggaaatggcccagttagttcagctctcagttggt 13101375  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 419
Target Start/End: Complemental strand, 13007647 - 13007575
Alignment:
Q  347 aagtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggt 419  Q
    |||||| ||||||||| ||   ||||||||||   |||||||||||| ||| ||||||||||||| |||||||    
T  13007647 aagtatcttagagacaatgtcctcactctctttttagcaggaaatggcacaattagttcaggtctcagttggt 13007575  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 13064754 - 13064794
Alignment:
Q  125 tggaagctacagaaatggctacatattggtcaagagaagaa 165  Q
    |||||||| ||||||||||| || |||||||||||||||||    
T  13064754 tggaagctgcagaaatggctccaaattggtcaagagaagaa 13064794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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