View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_high_12 (Length: 406)
Name: NF16727_high_12
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 337133 - 336755
Alignment:
| Q |
18 |
attagggtcatgtccaagaattattgaacaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
337133 |
attagggtcatgtccaagaattattgaacaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccaccgacccattttgttgttgaaca |
337034 |
T |
|
| Q |
118 |
tgattcaataaaggaatcaatgatttctcaactttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagatatcggagaagat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
337033 |
tgattcaataaaggaatcaatgatttctcaactttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagat |
336934 |
T |
|
| Q |
218 |
tcctattgtatttccattgatgtgaatctgttgtgaaaattcctaaaccaaaaggttggaacgtttcacgaaacctttcacctttctcaaaattgtcaaa |
317 |
Q |
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| T |
336933 |
tcctattgtatttccattgatgtgaatctgtagtgaaaattcctaaaccaaaaggttggaacgtttcacgaaacctttcacctttctcaaaattgtcaaa |
336834 |
T |
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| Q |
318 |
cctcttgctcatgatgtagtgaacattcaatggatcgtttgtgattacagcatacatgttggtaaaccatggtcctatg |
396 |
Q |
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| T |
336833 |
cctcttgctcatgatgtagtgaacattcaatggatcgtttgtgattacagcatacatgttggtaaaccatggtcctatg |
336755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 25 - 394
Target Start/End: Complemental strand, 341164 - 340795
Alignment:
| Q |
25 |
tcatgtccaagaattattgaacaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattca |
124 |
Q |
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| T |
341164 |
tcatgtccaagaattatcaaacaaatgttatcgaatgtgaatcgattgaacacatcttgtaaatcgaccaccgaccctttttgttgtagaacatgattca |
341065 |
T |
|
| Q |
125 |
ataaaggaatcaatgatttctcaactttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagatatcggagaagattcctatt |
224 |
Q |
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||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
341064 |
atattggaatcaatgatttctcaactttgttgtgaattatcttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctatt |
340965 |
T |
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| Q |
225 |
gtatttccattgatgtgaatctgttgtgaaaattcctaaaccaaaaggttggaacgtttcacgaaacctttcacctttctcaaaattgtcaaacctcttg |
324 |
Q |
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| T |
340964 |
gtatttccattgatctgaatctgtagtgaaaattcctaaaccaaaaggttcaaacatttcacgaaacaaatcacctttgacaaagttgtcaaagctcttg |
340865 |
T |
|
| Q |
325 |
ctcatgatgtagtgaacattcaatggatcgtttgtgattacagcatacatgttggtaaaccatggtccta |
394 |
Q |
| |
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| T |
340864 |
ctcatgatgtagtgaacattcaatggatcagttgtgataacaccatacatgccggtaaaccatggtccta |
340795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 332219 - 332085
Alignment:
| Q |
18 |
attagggtcatgtccaagaattattgaacaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaaca |
117 |
Q |
| |
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|||||| ||||||||||||||||| | ||||||||||| ||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||||| |
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| T |
332219 |
attaggatcatgtccaagaattatcaagcaaatgttatcgaatgtgaagcgattgaatacatcttgtaaatcgaccatcgaccctttttgttgttgaaca |
332120 |
T |
|
| Q |
118 |
tgattcaataaaggaatcaatgatttctcaacttt |
152 |
Q |
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|| ||||||||||||| ||||||||||||||||| |
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| T |
332119 |
tgtttcaataaaggaaataatgatttctcaacttt |
332085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 376902 - 376738
Alignment:
| Q |
30 |
tccaagaattattgaacaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattcaataaa |
129 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||| ||||| | ||| ||| |
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| T |
376902 |
tccaagaactacagaacaaatgttatcaaatgtgaagcgattgaagacatcttgtaaatcaaccactgaccc---ttgttgttgtacatggtccaacaaa |
376806 |
T |
|
| Q |
130 |
ggaatcaatgatttctcaactttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgttt |
197 |
Q |
| |
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|||||||| | |||| | ||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
376805 |
ggaatcaaacttctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgttt |
376738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 176
Target Start/End: Original strand, 356266 - 356396
Alignment:
| Q |
43 |
gaacaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattcaataaaggaatcaatgatt |
142 |
Q |
| |
|
||||||||||| || |||||||| |||||||| || ||||||||||| |||||||| || ||||||||| ||||| | ||| ||||||||||| || |
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| T |
356266 |
gaacaaatgttgtcgaatgtgaaacgattgaagacatcttgtaaatccaccactgagcc---ttgttgttgtacatggtccaacaaaggaatcaaacttt |
356362 |
T |
|
| Q |
143 |
tctcaactttgttgtgaatgattttctcttgaaa |
176 |
Q |
| |
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|||| | ||||| ||||||||||||| |||||| |
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| T |
356363 |
tctccaacttgttttgaatgattttcttttgaaa |
356396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 347594 - 347737
Alignment:
| Q |
30 |
tccaagaattattgaacaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattcaataaa |
129 |
Q |
| |
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|||||||| || ||||||||||| | |||||||| |||||||| || ||||||||||| ||||||||||| ||||||||| ||||| | || ||| |
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| T |
347594 |
tccaagaactacggaacaaatgttgttgaatgtgaaacgattgaagacatcttgtaaatccaccactgaccc---ttgttgttgtacatggtcaaacaaa |
347690 |
T |
|
| Q |
130 |
ggaatcaatgatttctcaactttgttgtgaatgattttctcttgaaa |
176 |
Q |
| |
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|||||||| | |||| | ||||| ||||||||||||| |||||| |
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| T |
347691 |
ggaatcaaacttctctccaacttgttttgaatgattttcttttgaaa |
347737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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