View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_high_17 (Length: 348)
Name: NF16727_high_17
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 37564375 - 37564697
Alignment:
| Q |
19 |
tacattaagaaaaaatctgataataaatgagggccaggtgatagaaaagtgatgaaaactaccacatgcatagccttcnnnnnnnnnnnnnnnnnnnnnn |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37564375 |
tacattaagaaaaaatctgataataaatgagggccaggtgatagaaaagtgatgaaaactaccacatgcatagccttctttttttttcttttttctattt |
37564474 |
T |
|
| Q |
119 |
nggcttccattttggtgcatcaccctctaatcattgccaggaataaaaacaaacgagtttggtcccatttcaggaaccaatcaacagaagccaacaactt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37564475 |
tggcttccattttggtgcatcaccctctaatcattgccaggaataaaaacaaacgagtttggtcccatttcaggaaccaatcaacagaagccaacaactt |
37564574 |
T |
|
| Q |
219 |
ttgtctgtccaattggccctttttcaattaaaagaataaagtctttatttttggcttttcaagattatgtaatgtaatgtaacatttgtctttatttttg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37564575 |
ttgtctgtccaattggccctttttcaattaaaagaataaagtctttatttttggcttttcaagattatgtaatgt-atgtaacatttgtctttatttttg |
37564673 |
T |
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| Q |
319 |
gtttatttacatatttcatctcac |
342 |
Q |
| |
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||||||||||||||||||| |||| |
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| T |
37564674 |
gtttatttacatatttcatttcac |
37564697 |
T |
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