View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16727_high_23 (Length: 296)

Name: NF16727_high_23
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16727_high_23
NF16727_high_23
[»] chr5 (1 HSPs)
chr5 (15-226)||(14495546-14495757)
[»] chr7 (2 HSPs)
chr7 (240-280)||(42261006-42261046)
chr7 (240-280)||(21558203-21558243)
[»] chr8 (1 HSPs)
chr8 (240-280)||(6536595-6536635)
[»] chr6 (1 HSPs)
chr6 (240-280)||(12188264-12188304)
[»] chr4 (2 HSPs)
chr4 (240-280)||(7292759-7292799)
chr4 (240-280)||(52254365-52254405)
[»] chr3 (2 HSPs)
chr3 (240-280)||(10969878-10969918)
chr3 (240-280)||(46553006-46553046)
[»] chr2 (1 HSPs)
chr2 (240-280)||(2750587-2750627)
[»] chr1 (1 HSPs)
chr1 (240-280)||(29753724-29753764)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 14495546 - 14495757
Alignment:
Q  15 atcaaagggtagggatcaatcttctatcctttaggtgggacccttaatgtgatccatcaatattggttgttggatttcaaccaaagtgtatatgctcaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14495546 atcaaagggtagggatcaatcttctatcctttaggtgggacccttaatgtgatccatcaatattggttgttggatttcaaccaaagtgtatatgctcaaa 14495645  T
Q  115 acagatttctaaactatatagaatacaaatgaatcaagtattataaacccttaatccgttttataagacttgtgtgacaaagtttaactttttcaatcaa 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14495646 acagatttctaaactatatagaatacaaatgaatcaagtattataaacccttaatccgttttataagacttgtgtgacaaagtttaacttttccaatcaa 14495745  T
Q  215 tagtaaaactaa 226  Q
    ||||||||||||    
T  14495746 tagtaaaactaa 14495757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 42261006 - 42261046
Alignment:
Q  240 gaagaagctaaactaacccgcctaaattggcactagagaga 280  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  42261006 gaagaagctaaactaacccacctaaattggcactagagaga 42261046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 21558243 - 21558203
Alignment:
Q  240 gaagaagctaaactaacccgcctaaattggcactagagaga 280  Q
    |||||||||||| |||||| ||||||||||||| |||||||    
T  21558243 gaagaagctaaattaacccacctaaattggcaccagagaga 21558203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 6536635 - 6536595
Alignment:
Q  240 gaagaagctaaactaacccgcctaaattggcactagagaga 280  Q
    |||||||||||| |||||| ||||||||||||| |||||||    
T  6536635 gaagaagctaaattaacccacctaaattggcaccagagaga 6536595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 12188264 - 12188304
Alignment:
Q  240 gaagaagctaaactaacccgcctaaattggcactagagaga 280  Q
    ||||||||||||||||||| |  ||||||||||||||||||    
T  12188264 gaagaagctaaactaaccccctcaaattggcactagagaga 12188304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 7292759 - 7292799
Alignment:
Q  240 gaagaagctaaactaacccgcctaaattggcactagagaga 280  Q
    ||||||||||||||||||| |  ||||||||||||||||||    
T  7292759 gaagaagctaaactaaccccctcaaattggcactagagaga 7292799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 52254365 - 52254405
Alignment:
Q  240 gaagaagctaaactaacccgcctaaattggcactagagaga 280  Q
    ||||||||||||||| |||||||| ||||||||| ||||||    
T  52254365 gaagaagctaaactagcccgcctacattggcactggagaga 52254405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 10969878 - 10969918
Alignment:
Q  240 gaagaagctaaactaacccgcctaaattggcactagagaga 280  Q
    ||||||||||||||||||| | ||||||||||| |||||||    
T  10969878 gaagaagctaaactaacccccttaaattggcaccagagaga 10969918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 46553046 - 46553006
Alignment:
Q  240 gaagaagctaaactaacccgcctaaattggcactagagaga 280  Q
    |||||| |||||||||||| || ||||||||||||||||||    
T  46553046 gaagaaactaaactaacccacccaaattggcactagagaga 46553006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 2750587 - 2750627
Alignment:
Q  240 gaagaagctaaactaacccgcctaaattggcactagagaga 280  Q
    ||||||||||||||||||| |  ||||||||||||||||||    
T  2750587 gaagaagctaaactaaccccctcaaattggcactagagaga 2750627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 29753764 - 29753724
Alignment:
Q  240 gaagaagctaaactaacccgcctaaattggcactagagaga 280  Q
    ||||||||||||||||||| | ||||||||||| |||||||    
T  29753764 gaagaagctaaactaaccctcttaaattggcaccagagaga 29753724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University