View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16727_high_32 (Length: 246)

Name: NF16727_high_32
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16727_high_32
NF16727_high_32
[»] chr3 (2 HSPs)
chr3 (57-158)||(20592629-20592730)
chr3 (149-185)||(20592731-20592767)
[»] chr4 (1 HSPs)
chr4 (57-160)||(7653564-7653667)
[»] chr6 (1 HSPs)
chr6 (57-150)||(4059294-4059386)
[»] chr7 (1 HSPs)
chr7 (57-150)||(11362342-11362434)
[»] chr5 (1 HSPs)
chr5 (58-150)||(21905454-21905545)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 20592629 - 20592730
Alignment:
Q  57 tggtgtttcacggtggtttggggtctgagttttggtttcacggtggtggtttggggattgggttttgattgagaatggaggaaaagggagaacgattggg 156  Q
    ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20592629 tggtgtttcacggtggtttggggtctgagcttgggtttcacagtggtggtttggggattgggtttcgattgagaatggaggaaaagggagaacgattggg 20592728  T
Q  157 tt 158  Q
    ||    
T  20592729 tt 20592730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 20592731 - 20592767
Alignment:
Q  149 cgattgggttttcacggtggtggtttgttggagttcg 185  Q
    ||||||||||||||||||||||||||| |||||||||    
T  20592731 cgattgggttttcacggtggtggtttggtggagttcg 20592767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 7653564 - 7653667
Alignment:
Q  57 tggtgtttcacggtggtttggggtctgagttttggtttcacggtggtggtttggggattgggttttgattgagaatggaggaaaagggagaacgattggg 156  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||  |||||    
T  7653564 tggtgtttcacggtggtttggggtctgagtttgggtttcacggtggtggtttggggattgtgtttcgattgagaatggaggaaaagggagaacagttggg 7653663  T
Q  157 tttt 160  Q
    ||||    
T  7653664 tttt 7653667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 4059386 - 4059294
Alignment:
Q  57 tggtgtttcacggtggtttggggtctgagttttggtttcacggtggtggtttggggattgggttttgattgagaatggaggaaaagggagaacg 150  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  4059386 tggtgtttcacggtggtttggggtctgactttgggtttcacggtggtggttt-gggattgggttatgattgaaaatggaggaaaagggagaacg 4059294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 11362434 - 11362342
Alignment:
Q  57 tggtgtttcacggtggtttggggtctgagttttggtttcacggtggtggtttggggattgggttttgattgagaatggaggaaaagggagaacg 150  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||  ||||||||||  |||||| |||||||||||||||||||||    
T  11362434 tggtgtttcacggtggtttggggtctgactttgggtttcacggtggtggttt-aggattgggttacgattgaaaatggaggaaaagggagaacg 11362342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 21905454 - 21905545
Alignment:
Q  58 ggtgtttcacggtggtttggggtctgagttttggtttcacggtggtggtttggggattgggttttgattgagaatggaggaaaagggagaacg 150  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||  |||||| |||||| ||||| ||||||||    
T  21905454 ggtgtttcacggtggtttggggtctgaatttgggtttcacggtggtggttt-gggattgggttgcgattgaaaatggacgaaaaaggagaacg 21905545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University