View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16727_high_46 (Length: 206)
Name: NF16727_high_46
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_high_46 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 27946071 - 27946241
Alignment:
| Q |
19 |
tgaatacatataagaaatttaagatttgg--tgtcaaagtcccaatcacacacgagatagcttcccttcatatataggcaggtgcacaataacaatgact |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27946071 |
tgaatacagataagaaatttaagatttggagtgttaaagtcccaatcatacacgagatagcttcccttcata----ggcaggtgcacaataacaatgact |
27946166 |
T |
|
| Q |
117 |
tagaattaaggttaatcaatcccttgaataacacatcctgattctatatcaaaagcttatgttttcctacctttg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27946167 |
tagaattaaggttaatcaatcccttgaataacacatcctcattctatatcaaaagcttatgttttcctacctttg |
27946241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 27437779 - 27437841
Alignment:
| Q |
90 |
ataggcaggtgcacaataacaatgacttagaattaaggttaatcaatcccttgaataacacat |
152 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
27437779 |
ataggcaagtgcacaataacaatgacttagaattgaggttagttaatcccttgaataacacat |
27437841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University