View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_11 (Length: 469)
Name: NF16727_low_11
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 223 - 451
Target Start/End: Complemental strand, 49145064 - 49144836
Alignment:
| Q |
223 |
ggttaagaaggagacgtgggtgattgtgaacgaagtggagaaattaaattatgggttgggattcgtacagcattagctagcagtaggagcatcaaatgga |
322 |
Q |
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| T |
49145064 |
ggttaagaaggagacgtgggtgattgtgaacgaagtggagaaattaaattatgggttgggattcgtacagcattagctagcagtaggagcataaaatgga |
49144965 |
T |
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| Q |
323 |
ggttgccactcttcatcaatttaattggcccacgtcatcagatatctcaactggatagatttttagatagataataaaattaaggttcacccgttaaggt |
422 |
Q |
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| T |
49144964 |
ggttgccactcttcatcaatttaattggcccacgtcatcagatatctcaactggatagatttttagatagataataaaattaagaggcattggttaaagt |
49144865 |
T |
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| Q |
423 |
ctttaaatggtaatttttcataaaaatat |
451 |
Q |
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| T |
49144864 |
ctttaaatggtaatttttcataaaaatat |
49144836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 49145272 - 49145118
Alignment:
| Q |
11 |
agaagaagaagaaggaagaggaagtgttcttctgggatcacaaggtgtgacaaaagaaggacatgctaatgaacagagatccataataacaaacagaaaa |
110 |
Q |
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| T |
49145272 |
agaagaagaagaaggaagaggaagtgttcttctgggatcacaaggtgtgacaaaagaaggacatgctaatgaacagagatccataataacaaactgaaaa |
49145173 |
T |
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| Q |
111 |
tggag---gaagtgtgcaatgaatatgtatgtaacaacaacttttgtttgtgttgg |
163 |
Q |
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| T |
49145172 |
tggaggaagaagtgtgcaatgca-atgtatgtaacaacaacttttgtttgtgttgg |
49145118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 452
Target Start/End: Complemental strand, 42197144 - 42197107
Alignment:
| Q |
415 |
gttaaggtctttaaatggtaatttttcataaaaatatg |
452 |
Q |
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| T |
42197144 |
gttaaagtctttaaatggtaatttatcataaaaatatg |
42197107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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