View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_12 (Length: 431)
Name: NF16727_low_12
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 415
Target Start/End: Complemental strand, 33169527 - 33169144
Alignment:
| Q |
12 |
atgaaaataagcggtgagactagttgataacatggctacccctgttaaaatatgagtggcctcatttatttgtcttcttttaaatcaaccttaaagtttg |
111 |
Q |
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| T |
33169527 |
atgaaaataagcggtgagactagttgataacatggctacccctgttaaaatatgagtggcctcatttgtttgtcttcttttaaatcaaccttaaagtttg |
33169428 |
T |
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| Q |
112 |
taaactgagcggcaaagaacttcctacaaattgtgataacataaccaagttctataacatcaatctgattcagt-aaggcatttgttggggttttgcaat |
210 |
Q |
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| T |
33169427 |
taaactgagcggcaaagaacttcctacaaattgtgataacataaccaagttctataacatcaatctgattcagtgaaggcatttgttggggttttgcaat |
33169328 |
T |
|
| Q |
211 |
caagcacgaaatcaatattatcaaattgcatgcatatcactggtccattgaagcgcatgaacaaacccaacgcttcccccacattcacaatacacaacgg |
310 |
Q |
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|||||| |||||||| |||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
33169327 |
caagcatgaaatcaacattatcaaat----tgcatatcactagtccattgaag-----------------cgcttccaccacattcacaatacacaacgg |
33169249 |
T |
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| Q |
311 |
agtaacacacattgttttggcctaaacaaaagcatcatcctcatctcgcaagtacatacctatacttgttctattaagcttatgcgaaaaagaggcatca |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33169248 |
agtaacacacattgttttggcctaaacaaaagcatcatcctcatctcgcaagtacatacctatacttgttctatttagcttatgcgaaaaagaggcatca |
33169149 |
T |
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