View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_13 (Length: 419)
Name: NF16727_low_13
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 52205504 - 52205858
Alignment:
| Q |
18 |
atgaacgtagaaatcgtaacgaagaatcatggttgtattgctctgttgcaggagtaatttctttgttatcttgcaagggtaactataaagttcacattta |
117 |
Q |
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| T |
52205504 |
atgaacgtagaaatcgtaacgaagaatcatggttgtattgctctgttgcagaattaatttctctgttatcttgcaagggtaactataaagttcacattta |
52205603 |
T |
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| Q |
118 |
caggacccnnnnnnnnttgttttgatctgcttgaagaatatattttacaactcacttgattgatactataattctcttttatgtaatattttaacgtggg |
217 |
Q |
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| T |
52205604 |
caggacccaaaaaaaattgttttgatctgcttgaagaatatattttacaactcacttgattgatactataattctcttttatgtaatattttaacgtggg |
52205703 |
T |
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| Q |
218 |
tctttattcattcgacattttttcaaaatatgtctcattaaacagttctaggaaagtaaatttgttgcattcgtagaacaattctcccgtttgtatcata |
317 |
Q |
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| T |
52205704 |
tccttattcattcgacattttttcaaaatatgtctcattaaacagttctaggaaagtaaatttgttgcattcgtagaacaattctcccgtttgtatcata |
52205803 |
T |
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| Q |
318 |
acaattctaatgtaaacaacaagtacatgtatttgattttctcttttgtgcttttgg |
374 |
Q |
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| T |
52205804 |
ac--ttctaatgtaaacaacaagtacatatatttgattttctctgttgtgcttttgg |
52205858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 34309578 - 34309929
Alignment:
| Q |
18 |
atgaacgtagaaatcgtaacgaagaatcatggttgtattgctctgttgcaggagtaatttctttgttatctt--gcaagggtaactataaagttcacatt |
115 |
Q |
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| T |
34309578 |
atgaacgtagaaattgtaacgaaaaatcatggttgtattgctttgttacaggagtaatttctctgttatcttctgcaagggttactatgaagtttacact |
34309677 |
T |
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| Q |
116 |
tacaggacccnnnnnnnnttgttttgatctgcttgaagaatatattttacaactcacttgattgatactataattctcttttatgtaatattttaac--g |
213 |
Q |
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|| || ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34309678 |
tatagaaccgaaaaaaatttgttttgatctgcttgaagaatatattgtacaactcacttgattgatactataattctcttttatgtaatattttaacgtg |
34309777 |
T |
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| Q |
214 |
tgggtctttattcattcgacattttttcaaaatatgtctcattaaacagttctaggaaagtaaatttgttgcattcgtagaacaattctcccgtttgtat |
313 |
Q |
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|||| | |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||| |
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| T |
34309778 |
tgggcccttattctttcgacatttttgcaaaatatgtctcattgaacagttctaggaaagtaaatctgtggcattcgtagaccaattctcccgtttgtat |
34309877 |
T |
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| Q |
314 |
cataacaattctaatgtaaacaacaagtacatgtatttgattttctcttttgtgctt |
370 |
Q |
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| T |
34309878 |
cataac--ttctaatgta---agcaagtacatgtatttgattttctctgttgtgctt |
34309929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 299 - 374
Target Start/End: Complemental strand, 3191259 - 3191186
Alignment:
| Q |
299 |
ttctcccgtttgtatcataacaattctaatgtaaacaacaagtacatgtatttgattttctcttttgtgcttttgg |
374 |
Q |
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|||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
3191259 |
ttctccagtttgtatcataac--ttctaatgtaaataacaagtacatgtatttgattttctctgttgtgcttttgg |
3191186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 3191372 - 3191270
Alignment:
| Q |
61 |
tgttgcaggagtaatttctttgttatctt--gcaagggtaactataaagttcacatttacaggacccnnnnnnnnttgttttgatctgcttgaagaatat |
158 |
Q |
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|||||||||||||||||| |||||| || |||| ||| ||||||||||||||||||| |||| || |||||||||||||||||||||||| |
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| T |
3191372 |
tgttgcaggagtaatttcagtgttattttctgcaaaggttactataaagttcacatttatagga-ccgaaaaaaaatgttttgatctgcttgaagaatat |
3191274 |
T |
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| Q |
159 |
attt |
162 |
Q |
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|||| |
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| T |
3191273 |
attt |
3191270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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