View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16727_low_15 (Length: 406)

Name: NF16727_low_15
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16727_low_15
NF16727_low_15
[»] chr8 (1 HSPs)
chr8 (18-396)||(39854372-39854749)
[»] chr4 (2 HSPs)
chr4 (66-383)||(21955306-21955622)
chr4 (66-228)||(11188340-11188502)
[»] chr3 (2 HSPs)
chr3 (76-355)||(52056034-52056312)
chr3 (76-355)||(53575644-53575922)
[»] scaffold0002 (1 HSPs)
scaffold0002 (76-355)||(466625-466903)
[»] chr5 (1 HSPs)
chr5 (76-355)||(35896017-35896295)
[»] chr2 (1 HSPs)
chr2 (76-355)||(30200789-30201067)
[»] chr1 (2 HSPs)
chr1 (76-355)||(31353555-31353833)
chr1 (76-355)||(16990842-16991120)
[»] chr7 (1 HSPs)
chr7 (76-257)||(27142913-27143094)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 39854749 - 39854372
Alignment:
Q  18 ggtttttgataacattgagactgcttggaacttttgggttaagtatggatggtggaagggtttgatttggagttaggaaggattatacacgcaagaaaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  39854749 ggtttttgataacattgagactgcttggaacttttgggtaaagtatggatggtggaagggtttgatttggagggaggaaggattatacacacaagaaaaa 39854650  T
Q  118 agatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagccagacaaacatgatcataaaacagtcaatccaagactagagact 217  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39854649 agatggttcaactaattcatgtagatttgtttgctttaaagaaggtttacgaaagccagacaaacatgatcgtaaaacagtcaatccaagactagagact 39854550  T
Q  218 agaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggttcatgaatttgtggaagagcataaccatgatttacatctgcaa 317  Q
    ||||||||||||||||||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39854549 agaacgaattgtcgagcaagattaggacttaaaaatgtggttg-aaaaaatggtggttcatgaatttgtggaagagcataaccatgatttacatctgcaa 39854451  T
Q  318 gaaataattcatatgttgtcatctcaacaaaaagtttcagaattacactgcaatgaaattgatttagcatatgatgatg 396  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39854450 gaaacaattcatatgttgtcatctcaacgaaaagtttcagaattacactgcaatgaaattgatttagtatatgatgatg 39854372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 66 - 383
Target Start/End: Original strand, 21955306 - 21955622
Alignment:
Q  66 atggtggaagggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggttt 165  Q
    ||||||||| |||| ||||||||   |||||  |||||||||  |||||||||||||||||| ||| |||||| ||||||||||| | ||||||||||||    
T  21955306 atggtggaaaggttggatttggatcgaggaaacattatacacataagaaaaaagatggttcagctagttcttccagatttgtttgatgtaaagaaggttt 21955405  T
Q  166 acgaaagccagacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnn 265  Q
      | ||| |||||||||  ||  |||||||| ||||||||| || |||||||  ||| ||||||  ||||| |  |||| ||||||||||||||          
T  21955406 ttggaagtcagacaaacgagaatataaaacaatcaatccaaaaccagagactgtaacaaattgtaaagcaacaccaggacttaaaaatgtggtt-ccaac 21955504  T
Q  266 nntggtggttcatgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttcagaattacac 365  Q
      ||||||| ||||||||||  || || ||||||||||||||||||||   | ||| | |||||||||||||||||||||||||||| ||| |||| ||     
T  21955505 attggtggtgcatgaatttgcagaggaacataaccatgatttacatctatcacaaacacttcatatgttgtcatctcaacaaaaagtatcaaaatttcat 21955604  T
Q  366 tgcaatgaaattgattta 383  Q
    ||||||||||||||||||    
T  21955605 tgcaatgaaattgattta 21955622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 228
Target Start/End: Original strand, 11188340 - 11188502
Alignment:
Q  66 atggtggaagggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggttt 165  Q
    |||||||||| ||| |||||||||| |||||  | ||| |||  |||| ||||||||||| ||| | |||||  ||||||||||| | ||| ||||||||    
T  11188340 atggtggaagagttggatttggagtgaggaaacaatattcacataagacaaaagatggtttaacgacttcttgcagatttgtttgttgtaacgaaggttt 11188439  T
Q  166 acgaaagccagacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattg 228  Q
     ||||||||||||||||  |||  ||||||  |||||||||| | |||||| ||||| |||||    
T  11188440 gcgaaagccagacaaacgagattttaaaactatcaatccaaggccagagaccagaacaaattg 11188502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 76 - 355
Target Start/End: Complemental strand, 52056312 - 52056034
Alignment:
Q  76 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 175  Q
    |||| |||| ||||| ||||| |||||||||| || |||||| |||||||||  |  ||||| ||| ||||||||||  ||||||||  | |||||||||    
T  52056312 ggttggattcggagtgaggaaagattatacacacaggaaaaaggatggttcagtttcttcttgtaggtttgtttgctgcaaagaaggcatgcgaaagcca 52056213  T
Q  176 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggtt 275  Q
    ||||| |  ||| ||||||||   ||||||||||||||||| ||||| ||||||  |||||| |||||| |||| ||||||| ||       || ||||     
T  52056212 gacaagcgagattataaaacaaagaatccaagactagagaccagaacaaattgtgaagcaaggttaggacttaagaatgtggatg-gaaaattgatggtg 52056114  T
Q  276 catgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttc 355  Q
    ||||| |||||||| || || ||||| || |||| | ||| ||||| || |||||||||||| ||||||| ||| |||||    
T  52056113 catgattttgtggaggaccacaaccacgagttacttttgccagaaacaactcatatgttgtcgtctcaacgaaaggtttc 52056034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 76 - 355
Target Start/End: Complemental strand, 53575922 - 53575644
Alignment:
Q  76 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 175  Q
    |||| |||| ||||| ||||| |||||||||| ||  ||||| |||||||||  |  ||||| ||| ||||||||||  ||||||||  | |||||||||    
T  53575922 ggttggattcggagtgaggaaagattatacacacagaaaaaaggatggttcagtttcttcttgtaggtttgtttgctgcaaagaaggcatgcgaaagcca 53575823  T
Q  176 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggtt 275  Q
    ||||| |  ||| ||||||||   ||||||||||||||||| ||||| ||||||  |||||| |||||| |||| ||||||| ||       || ||||     
T  53575822 gacaagcgagattataaaacaaagaatccaagactagagaccagaacaaattgtgaagcaaggttaggacttaagaatgtggatg-gaaaattgatggtg 53575724  T
Q  276 catgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttc 355  Q
    ||||| |||||||| || || ||||| || |||| | ||| ||||| || |||||||||||| ||||||| ||| |||||    
T  53575723 catgattttgtggaggaccacaaccacgagttacttttgccagaaacaactcatatgttgtcgtctcaacgaaaggtttc 53575644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 76 - 355
Target Start/End: Complemental strand, 466903 - 466625
Alignment:
Q  76 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 175  Q
    |||| |||| ||||| ||||| |||||||||| ||  ||||| |||||||||  |  ||||| ||| ||||||||||  ||||||||  | |||||||||    
T  466903 ggttggattcggagtgaggaaagattatacacacagaaaaaaggatggttcagtttcttcttgtaggtttgtttgctgcaaagaaggcatgcgaaagcca 466804  T
Q  176 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggtt 275  Q
    ||||| |  ||| ||||||||   ||||||||||||||||| ||||| ||||||  |||||| |||||| |||| ||||||| ||       || ||||     
T  466803 gacaagcgagattataaaacaaagaatccaagactagagaccagaacaaattgtgaagcaaggttaggacttaagaatgtggatg-gaaaattgatggtg 466705  T
Q  276 catgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttc 355  Q
    ||||| |||||||| || || ||||| || |||| | ||| ||||| || |||||||||||| ||||||| ||| |||||    
T  466704 catgattttgtggaggaccacaaccacgagttacttttgccagaaacaactcatatgttgtcgtctcaacgaaaggtttc 466625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 76 - 355
Target Start/End: Original strand, 35896017 - 35896295
Alignment:
Q  76 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 175  Q
    |||| |||| ||||| ||||| |||||||||| ||  ||||| |||||||||  |  ||||| ||| ||||||||||  ||||||||  | |||||||||    
T  35896017 ggttggattcggagtgaggaaagattatacacacagaaaaaaggatggttcagtttcttcttgtaggtttgtttgctgcaaagaaggcatgcgaaagcca 35896116  T
Q  176 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggtt 275  Q
    ||||| |  ||| ||||||||   ||||||||||||||||| ||||| ||||||  |||||| |||||| |||| ||||||| ||       || ||||     
T  35896117 gacaagcgagattataaaacaaagaatccaagactagagaccagaacaaattgtgaagcaaggttaggacttaagaatgtggatg-gaaaattgatggtg 35896215  T
Q  276 catgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttc 355  Q
    ||||| |||||||| || || ||||| || |||| | ||| ||||| || |||||||||||| ||||||| ||| |||||    
T  35896216 catgattttgtggaggaccacaaccacgagttacttttgccagaaacaactcatatgttgtcgtctcaacgaaaggtttc 35896295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 76 - 355
Target Start/End: Complemental strand, 30201067 - 30200789
Alignment:
Q  76 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 175  Q
    |||| |||| ||||| ||||| |||||||||| ||  ||||| |||||||||  |  ||||| ||| ||||||||||  ||||||||  | |||||||||    
T  30201067 ggttggattcggagtgaggaaagattatacacacagaaaaaaggatggttcagtttcttcttgtaggtttgtttgctgcaaagaaggcatgcgaaagcca 30200968  T
Q  176 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggtt 275  Q
    ||||| |  ||| ||||||||   ||||||||||||||||| ||||| ||||||  |||||| |||||| |||| ||||||| ||       || ||||     
T  30200967 gacaagcgagattataaaacaaagaatccaagactagagaccagaacaaattgtgaagcaaggttaggacttaagaatgtggatg-gaaaattgatggtg 30200869  T
Q  276 catgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttc 355  Q
    ||||| |||||||| || || ||||| || |||| | ||| ||||| || |||||||||||| ||||||| ||| |||||    
T  30200868 catgattttgtggaggaccacaaccacgagttacttttgccagaaacaactcatatgttgtcgtctcaacgaaaggtttc 30200789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 76 - 355
Target Start/End: Original strand, 31353555 - 31353833
Alignment:
Q  76 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 175  Q
    |||| |||| ||||| ||||| |||||||||| ||  ||||| |||||||||  |  ||||| ||| ||||||||||  ||||||||  | |||||||||    
T  31353555 ggttggattcggagtgaggaaagattatacacacagaaaaaaggatggttcagtttcttcttgtaggtttgtttgctgcaaagaaggcatgcgaaagcca 31353654  T
Q  176 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggtt 275  Q
    ||||| |  ||| ||||||||   ||||||||||||||||| ||||| ||||||  |||||| |||||| |||| ||||||| ||       || ||||     
T  31353655 gacaagcgagattataaaacaaagaatccaagactagagaccagaacaaattgtgaagcaaggttaggacttaagaatgtggatg-gaaaattgatggtg 31353753  T
Q  276 catgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttc 355  Q
    ||||| |||||||| || || ||||| || |||| | ||| ||||| || |||||||||||| ||||||| ||| |||||    
T  31353754 catgattttgtggaggaccacaaccacgagttacttttgccagaaacaactcatatgttgtcgtctcaacgaaaggtttc 31353833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 355
Target Start/End: Original strand, 16990842 - 16991120
Alignment:
Q  76 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 175  Q
    |||| |||| ||||| ||||| |||||||||| ||  ||||| |||||||||  |  ||||| ||| ||||||||||  ||||||||  | |||||||||    
T  16990842 ggttggattcggagtgaggaaagattatacacacagcaaaaaggatggttcagtttcttcttgtaggtttgtttgctgcaaagaaggcatgcgaaagcca 16990941  T
Q  176 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggtt 275  Q
    ||||| |  ||| ||||||||   ||||||||||||||||| ||||| ||||||  | |||| |||||| |||| ||||||| ||       || ||||     
T  16990942 gacaagcgagattataaaacaaagaatccaagactagagaccagaacaaattgtgaaacaaggttaggacttaagaatgtggatg-gaaaattgatggtg 16991040  T
Q  276 catgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttc 355  Q
    ||||| |||||||| || || ||||| || |||| | ||| ||||| || |||||||||||| ||||||| ||| |||||    
T  16991041 catgattttgtggaggaccacaaccacgagttacttttgccagaaacaactcatatgttgtcgtctcaacgaaaggtttc 16991120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 76 - 257
Target Start/End: Original strand, 27142913 - 27143094
Alignment:
Q  76 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 175  Q
    |||| |||||||||| ||||| |||||||||| || ||  || |||||||||| |  ||||| ||| || |||||||  ||||||||  |||||||||||    
T  27142913 ggttggatttggagtgaggaaagattatacacacaggagcaaggatggttcaatttcttcttgtaggttcgtttgctgcaaagaaggcatacgaaagcca 27143012  T
Q  176 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtgg 257  Q
     |||| |  ||||||||||||   ||| |||||||||| || ||||| ||||||  |||||||||| || |||| |||||||    
T  27143013 aacaagcgagatcataaaacaaagaattcaagactagaaaccagaacaaattgtgaagcaagattatgacttaagaatgtgg 27143094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University