View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_17 (Length: 402)
Name: NF16727_low_17
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 28243298 - 28243700
Alignment:
| Q |
1 |
caaatcaatgaaaattaagtgcaattgctttttatctgttgatatatctcttgcacatgttgtagtaaatagatttcttccatggtcgacttccga-cat |
99 |
Q |
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| T |
28243298 |
caaatcaatgaaaattaagtgcaattgctttttatctgttgatatatctcttgcacacattgtagtaaatagatttcttccatggtcgacttcccaacat |
28243397 |
T |
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| Q |
100 |
aaaattaaattgattattaataacttgagtctcttttcttaatctctgtttgatcactctttctcaaaactttatagcatgattcataagtttgatcagc |
199 |
Q |
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| T |
28243398 |
aaaattaaattgattattagtaacttgagtctcttttcttaatctctgttagatcactctttctcaaaactttatagcatgattcataagtttgatcagc |
28243497 |
T |
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| Q |
200 |
tataatttgcacaatttcgtgtacactgttattcttatagatcagaattaaaattctttttctccactcgtcacatttagactattgtcatgtttcaata |
299 |
Q |
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| T |
28243498 |
tataatttgcacaattttgtgtacactgttattcttatagatcagaattaaaattctttttctccactcgtcacatttagactattgtcatgtttcaatg |
28243597 |
T |
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| Q |
300 |
cccttatctaattaatcttgtggatgcatcaccttcctttgtttcccaaaaaggatgtcgcttgcataaaacaatcaaattagaaccttaagaatagcaa |
399 |
Q |
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| T |
28243598 |
cccttatctaattaatcttgtggatgcatcaccttcctttgtttcccaaaaaggatgtcgcttgcataaaacaatcaaattagaaccttaagaatagcaa |
28243697 |
T |
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| Q |
400 |
cta |
402 |
Q |
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| T |
28243698 |
cta |
28243700 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 7789633 - 7789698
Alignment:
| Q |
96 |
acataaaattaaattgattattaataacttgagtctcttttcttaatctctgtttgatcactcttt |
161 |
Q |
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| T |
7789633 |
acataaaaccaaattgattatgagtaactcgagtctcttttgttaatctttgttcaatcactcttt |
7789698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 27916719 - 27916627
Alignment:
| Q |
79 |
tccatggtcgacttccgacataaaattaaattgattattaataacttgagtctcttttcttaatctctgtttgatcactctttctcaaaactt |
171 |
Q |
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| T |
27916719 |
tccatggtcgaccttagacataaaaccaaattggttatcactaacttgggtctcttttcttattcttcgttcaatcaccctttctcataactt |
27916627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 48220880 - 48220808
Alignment:
| Q |
120 |
taacttgagtctcttttcttaatctctgtttgatcactctttctcaaaactttatagcatgattcataagttt |
192 |
Q |
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| T |
48220880 |
taactcgagtctcttttcttaatgtttgtttaatcactctctatcataacttcatgatatgattcataagttt |
48220808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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