View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_18 (Length: 377)
Name: NF16727_low_18
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 42751067 - 42750727
Alignment:
| Q |
18 |
ttctcccgttttcaataaagggacatgttgtgttgtttacaagttcttcaaagtttgtgaagtgatcgaatatatcaatgttgtttgaatggtaatttat |
117 |
Q |
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| T |
42751067 |
ttctcccgttttcaataaagggacatgttttgttgtgtacaagttctttaaagtttgtgaagtga----atatttcaatgttgtttgaatggtaatttat |
42750972 |
T |
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| Q |
118 |
gatgaatggaatcaaatatgaataagatataacaatatgaattaaaataatgttcaaccactctctaacaatttattccttttcnnnnnnnnnnnnnttc |
217 |
Q |
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| T |
42750971 |
gatgaatggaatcaaatatgaataagataaaacaatatgaattaaaataatgttcaaccaatctctaacaatttattccttttcaaaaaaaaaaaaattc |
42750872 |
T |
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| Q |
218 |
ctataacgtattaacattagaaaaatattgtgatttgtcaaaaaacaaacacatgagaaattaataccgcaagattatacggaaaagatattaataatat |
317 |
Q |
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| T |
42750871 |
ctataacgtattaacattagaaaaatattgtgatttgtcaaaaaacaaacacattagaaattaataccgcaagattatacggaaaagagattaataatat |
42750772 |
T |
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| Q |
318 |
gttttaataacattgaannnnnnngtataaagactatgttggtat |
362 |
Q |
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| T |
42750771 |
gttttaataacattgaatttttttgtataaagactatgttggtat |
42750727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 42760529 - 42760355
Alignment:
| Q |
18 |
ttctcccgttttcaataaagggacatgttgtgttgtttacaagttcttcaaagtttgtgaagtgatcgaatatatcaatgttgtttgaatggtaatttat |
117 |
Q |
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| T |
42760529 |
ttctcccgttttcaataaagggacatgttgtgttgtgtacaagttcttcaaagtttgtgaagt----gaatatttcaatgttgtttgaatggtaatttat |
42760434 |
T |
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| Q |
118 |
gatgaatggaatcaaatatgaataagatataacaatatgaattaaaataatgttcaaccactctct-aacaatttattcct |
197 |
Q |
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| T |
42760433 |
gatgaatggaatcaa--atgaataagataaaacaacatgaaataagataatgtttaaccactctgtcaacaatttattcct |
42760355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 146
Target Start/End: Complemental strand, 42741689 - 42741588
Alignment:
| Q |
39 |
gacatgttgtgttgtttacaagttcttcaaagtttgtgaagtgatcgaatatatcaatgttgtttgaatggtaatttatgatgaatggaatcaaatatga |
138 |
Q |
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| T |
42741689 |
gacatgttgtattatgtacaagttcttcaaaggttgtgaagtga----atatatcaatgttgttttaatggtaatttatggtgagtgaaatcaa--atga |
42741596 |
T |
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| Q |
139 |
ataagata |
146 |
Q |
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|||||||| |
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| T |
42741595 |
ataagata |
42741588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 358
Target Start/End: Complemental strand, 42760359 - 42760213
Alignment:
| Q |
215 |
ttcctataacgtattaacattagaaaaatattgtgatttgtcaaa-----aaacaaacacatgagaaattaataccgcaagattatacggaaaagatatt |
309 |
Q |
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||||||||||||||||||||||||||||| ||||||||| | ||| ||| |||| ||| ||||| ||||| || |||||||| || ||||| ||| |
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| T |
42760359 |
ttcctataacgtattaacattagaaaaat-ttgtgatttataaaagaaaaaaaaaaacgcattagaaa--aatactgctagattatatgggaaagagatt |
42760263 |
T |
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| Q |
310 |
aa-taatatgttttaataacattgaannnnnnngtataaagactatgttg |
358 |
Q |
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| T |
42760262 |
aaataatatgttttaataacattgaatttttttgtataaagactatgttg |
42760213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 23042791 - 23043108
Alignment:
| Q |
18 |
ttctcccgttttcaataaagggacatgttgtgttgtttacaagttcttcaaagtttgtgaagtgatcgaatatatcaatgttgtttgaatggtaatttat |
117 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23042791 |
ttctcccattttcaataaagggacatgttgtgttgtgtacaagttcttcaaagtttgtgaagt----gaatatatcaatgttgtttgaatggtaatttat |
23042886 |
T |
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| Q |
118 |
gatgaatggaatcaaatatgaataagatataacaatatgaattaaaataatgttcaaccactctctaacaatttattccttttcnnnnnnnnnnnnnttc |
217 |
Q |
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| T |
23042887 |
gatgaattgaatcaa--atgaataagataaaacaatatgaaataaaataatgtttaaccactctat-tcaatttattcc--------------------- |
23042962 |
T |
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| Q |
218 |
ctataacgtattaacattagaaaaatattgtgatttgtcaaaaaa---caaacacatgagaaattaataccgcaagatt-atacggaaaagatattaata |
313 |
Q |
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| T |
23042963 |
-tataacgtataaacattagaaaaatattgtgatttgtcaaaaaaaataaaacacattagaaa--aatgctgctagattaatatggaaaagagattaata |
23043059 |
T |
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| Q |
314 |
atatgttttaataacattgaannnnnnngtataaagactatgttggtat |
362 |
Q |
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| T |
23043060 |
aaatgttttaataacattgaatttttttgtataaagactatgttggtat |
23043108 |
T |
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