View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16727_low_19 (Length: 371)
Name: NF16727_low_19
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_19 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 21903317 - 21903107
Alignment:
| Q |
1 |
atcttcaacgtctgtctcaaattccagctcaaaagggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
21903317 |
atcttcaacgtctgtctcaaattccagctcaaaatggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcatt |
21903218 |
T |
|
| Q |
101 |
ttgaaaatgtttctaagcaactatcgcacagtcgccgagtcgcagtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatcttc |
200 |
Q |
| |
|
|||||| ||||||| || | ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
21903217 |
ttgaaattgtttctcagaagctatcgcacagtcgccgagtcgccgtgaaaccgtgttccgtcttcgtcaccgcgaaatcgtaatttctaggtaaatcttc |
21903118 |
T |
|
| Q |
201 |
taatctatgtg |
211 |
Q |
| |
|
|||||| |||| |
|
|
| T |
21903117 |
taatctctgtg |
21903107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 255 - 352
Target Start/End: Complemental strand, 21903062 - 21902964
Alignment:
| Q |
255 |
gaattgttctatgtaa-ttttaattgtaattatcaactttgtgttgaatcgtaattttaatcgttataggtaaattgattttcgtttttgattttgaat |
352 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
21903062 |
gaattgttctaggtaaattttaattgtaattatcaagtttgtgttgaatcgtaattttaattattataggtaaattgattttcgtttttgattttgaat |
21902964 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 7653532 - 7653322
Alignment:
| Q |
1 |
atcttcaacgtctgtctcaaattccagctcaaaagggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcgtt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7653532 |
atcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcgtt |
7653433 |
T |
|
| Q |
101 |
ttgaaaatgtttctaagcaactatcgcacagtcgccgagtcgcagtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatcttc |
200 |
Q |
| |
|
|||||| ||||||| || | |||||||||| ||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7653432 |
ttgaaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaacagtgttccatcttcgtcgccgcgaaatcgtaatttctaggtaaatcttc |
7653333 |
T |
|
| Q |
201 |
taatctatgtg |
211 |
Q |
| |
|
|||||| |||| |
|
|
| T |
7653332 |
taatctctgtg |
7653322 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 9109870 - 9109685
Alignment:
| Q |
11 |
tctgtctcaaattccagctcaaaagggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcgttttgaaaatgt |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |
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|
| T |
9109870 |
tctgtctcaaattccagctcaaaaaggtaacctaactcaaattcttcttcaactaacttcaatctatgt-tttttgttttgattttcattttgaaattgt |
9109772 |
T |
|
| Q |
111 |
ttctaagcaactatcgcacagtcgccgagtcgcagtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatcttctaatctatgt |
210 |
Q |
| |
|
|||| | | |||||| ||| || ||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||| ||| |
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|
| T |
9109771 |
ttctcaatagctatcg--------------cgccgtcaaaccgtgttccgtcatcgccgccgcgaaatcgtaatttctaggtaaatcctgtaatctctgt |
9109686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 255 - 357
Target Start/End: Complemental strand, 7653291 - 7653188
Alignment:
| Q |
255 |
gaattgttctatgtaat-tttaattgtaattatcaactttgtgttgaatcgtaattttaatcgttataggtaaattgattttcgtttttgattttgaatc |
353 |
Q |
| |
|
||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
7653291 |
gaattgttctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaattttaattgttataggtaaattgattttcgtttttgattttgaatc |
7653192 |
T |
|
| Q |
354 |
tgtg |
357 |
Q |
| |
|
|||| |
|
|
| T |
7653191 |
tgtg |
7653188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 20592570 - 20592369
Alignment:
| Q |
10 |
gtctgtctcaaattccagctcaaaagggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcgttttgaaaatg |
109 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
20592570 |
gtctctctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcgttttgaaattg |
20592471 |
T |
|
| Q |
110 |
tttctaagcaactatcgcacagtcgccgagtcgcagtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatcttctaatctatg |
209 |
Q |
| |
|
||||| |||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || |
|
|
| T |
20592470 |
tttctcagcagctatcgcacattcgccgagtcgccgtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatcctgtaatctctg |
20592371 |
T |
|
| Q |
210 |
tg |
211 |
Q |
| |
|
|| |
|
|
| T |
20592370 |
tg |
20592369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 11362477 - 11362687
Alignment:
| Q |
1 |
atcttcaacgtctgtctcaaattccagctcaaaagggtaacataactcaaatcctt-cttcaactaacttcaatctatgtatttttgttttgattttcgt |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
11362477 |
atcttcaacgtcggtctcaaattccagctcaaaaaggtaacataactcaaatcctttcttcaactaacttcaatctatgtatttttgtttcgattttcat |
11362576 |
T |
|
| Q |
100 |
tttgaaaatgtttctaagcaactatcgcacagtcgccgagtcgcagtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatctt |
199 |
Q |
| |
|
||||||| ||||||| | | |||||||||| |||||||||||| |||||||| |||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11362577 |
tttgaaattgtttctctgaagctatcgcacaatcgccgagtcgccgtgaaaccatgttcc-tcttcgtcgctgcgaaatcgtaatttctaggtaaatctt |
11362675 |
T |
|
| Q |
200 |
ctaatctatgtg |
211 |
Q |
| |
|
||||||| |||| |
|
|
| T |
11362676 |
ctaatctctgtg |
11362687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 11362746 - 11362816
Alignment:
| Q |
269 |
aattttaattgtaattatcaactttgtgttgaatcgtaattttaatcgttataggtaaattgattttcgtt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11362746 |
aattttaattgtaattatcaactttgtgttgaatggtaattttaattgttataggtaaattgattttcgtt |
11362816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 4059429 - 4059636
Alignment:
| Q |
1 |
atcttcaacgtctgtctcaaattccagctcaaaagggtaacataactcaaatcc-ttcttcaactaacttcaatctatgtatttttgttttgattttcgt |
99 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
4059429 |
atcttcaacgtcggtctcaaattccagatcaaaaaggtaacataactcaaatcctttcttcaactaacttcaatctatgtatttttgtttcaattttcat |
4059528 |
T |
|
| Q |
100 |
tttgaaaatgtttctaagcaactatcgcacagtcgccgagtcgcagtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatctt |
199 |
Q |
| |
|
||||||| ||||||| | |||||||||| |||||||||||| |||||||| |||||| ||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4059529 |
tttgaaattgtttctctaaagctatcgcacaatcgccgagtcgccgtgaaaccatgttcc-tcttcgt---cgcgacatcgtaatttctaggtaaatctt |
4059624 |
T |
|
| Q |
200 |
ctaatctatgtg |
211 |
Q |
| |
|
||||||| |||| |
|
|
| T |
4059625 |
ctaatctctgtg |
4059636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 4059695 - 4059765
Alignment:
| Q |
269 |
aattttaattgtaattatcaactttgtgttgaatcgtaattttaatcgttataggtaaattgattttcgtt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4059695 |
aattttaattgtaattatcaactttgtgttgaatggtaattttaattgttataggtaaattgattttcgtt |
4059765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7863633 - 7863572
Alignment:
| Q |
1 |
atcttcaacgtctgtctcaaattccagctcaaaagggtaacataactcaaatccttcttcaa |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| |
|
|
| T |
7863633 |
atcttcaacgtctgtctcaaattccagctcaaaaaggtaacctaactcaaattcttcttcaa |
7863572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 33172140 - 33172264
Alignment:
| Q |
79 |
tatttttgttttgattttcgttttgaaaatgtttctaagcaactatcgcacagtcgccgagtcgcagtgaaaccgtgttccgtcttcgtcgccgcgaaat |
178 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
33172140 |
tatttttgttttgattttcgttttgaaattgtttctcagcagctatcgcacagtcgccg--------tgaaaccttgttccgtcttcatcgccgcgaaat |
33172231 |
T |
|
| Q |
179 |
cgtaatttctaggtaaatcttctaatctatgtg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
33172232 |
cgtaatttctaggtaaatcttctaatctctgtg |
33172264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 255 - 357
Target Start/End: Original strand, 33172309 - 33172412
Alignment:
| Q |
255 |
gaattgttctatgtaa-ttttaattgtaattatcaactttgtgttgaatcgtaattttaatcgttataggtaaattgattttcgtttttgattttgaatc |
353 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33172309 |
gaattgttctaggtaaattttaattgtaattatcaactttgtgtagaatcgtaattttaattgttataagtaaattgattttcgtttttgattttgaatc |
33172408 |
T |
|
| Q |
354 |
tgtg |
357 |
Q |
| |
|
|||| |
|
|
| T |
33172409 |
tgtg |
33172412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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