View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_2 (Length: 673)
Name: NF16727_low_2
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_2 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 4202964 - 4203378
Alignment:
| Q |
1 |
aaacatctccacctcccgttctcgacgacgtgtcgaaggaatccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4202964 |
aaacatctccacctcccgttctcgacgacgtgtcgaaggaatccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtccta |
4203063 |
T |
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| Q |
101 |
catcttctaaacacacaatctttcttagccctattaccacaatcttgacaaactctatactcagaaccatacacaccattttcttcactctccatcatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4203064 |
catcttctaaacacacaatctttcttagccctattaccacaatcttgacacactctatactcagaaccatacacaccattttcttcactctccatcatag |
4203163 |
T |
|
| Q |
201 |
caatttttccatgattctcttcttcattgatcactccnnnnnnnggaagattcactacttcaggacacatcctaaggttccaaaaattgttattgttact |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4203164 |
caatttttccatgattctcttcttcagtgatcactcctttttttggaagattcactacttcaggacacatcctaagattccaaaaattgttattgttact |
4203263 |
T |
|
| Q |
301 |
aggattttcttgaacttcattgttttgagattgttgttgtggcatgcaaggtgtagcagtgagaagtggaaaaatgccaaaaccaacacttaaggaagct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4203264 |
aggattttcttgaacttcattgttttgagattgttgttgtggcatgcaaggtgtagcagtgagaagtggaaaaatgccaaaaccaacacttaatgaagct |
4203363 |
T |
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| Q |
401 |
gatgaaggtaaagag |
415 |
Q |
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| T |
4203364 |
gatgaaggtaaagag |
4203378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 488 - 657
Target Start/End: Original strand, 4203457 - 4203626
Alignment:
| Q |
488 |
agagaagaaggtgatggagctatgagaactaggtctctaagacctaacatactcattggaacaaacaaattacaaattctctgagattttgaggtttttg |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4203457 |
agagaagaaggtgatggagctatgagaactaggtctctaagacctaacatactcattggaacaaacaagttacaaattctctgagattttgaggtttttg |
4203556 |
T |
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| Q |
588 |
gagaagaaagaggatgttgttttgtgttattgaggtgttgttgatttatatagagagaatgagaacagaa |
657 |
Q |
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| T |
4203557 |
gagaagaaagaggatgttgttttgtgttattgaggtgttgttgatttatatagagagaatgagaacagaa |
4203626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 16960 - 17082
Alignment:
| Q |
41 |
atccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtcctacatcttctaaacacacaatctttcttagccctattaccac |
140 |
Q |
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||||| || ||||||| ||||||||||||||| | ||||| || ||||||||||||||||||||| || | ||||||||||||||| ||||| |||| |
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| T |
16960 |
atccacgtgctcttcacgtgagtactacaatcaaatccacgacctttacaacaagtcctacatcttttatagctacaatctttcttagctctatttccac |
17059 |
T |
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| Q |
141 |
aatcttgacaaactctatactca |
163 |
Q |
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| T |
17060 |
aatcttgacaaaccctaaactca |
17082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 14512853 - 14512731
Alignment:
| Q |
41 |
atccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtcctacatcttctaaacacacaatctttcttagccctattaccac |
140 |
Q |
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||||| || ||||||| ||||||||||||||| | ||||| || ||||||||||||||||||||| || | ||||||||||||||| ||||| |||| |
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| T |
14512853 |
atccacgtgctcttcacgtgagtactacaatcaaatccacgacctttacaacaagtcctacatcttttatagctacaatctttcttagctctatttccac |
14512754 |
T |
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| Q |
141 |
aatcttgacaaactctatactca |
163 |
Q |
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||||||||||||| ||| ||||| |
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| T |
14512753 |
aatcttgacaaaccctaaactca |
14512731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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