View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_22 (Length: 339)
Name: NF16727_low_22
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 27021065 - 27021311
Alignment:
| Q |
16 |
caattccatgtgcctcaaagccccaaaagtgactaccagttcgaccaaaacctgattgaacctcatcagctataaagagacctcctgcttttttgatgat |
115 |
Q |
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| T |
27021065 |
caattccatgtgcctcaaagccccaaaagtgactaccagttcgaccaaaacctgactgaacctcatcggctataaagacacctcctgcctttttgatgat |
27021164 |
T |
|
| Q |
116 |
gctataaactgcaggcaagtaacctggagccaattctatcactccacctactccctgtgtcatgcaccaacctttcactgaacaatatgaacccctttac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||| || ||||||||||||||||| |
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| T |
27021165 |
gctataaactgcaggcaagtaacctggagccaattctatcactccacccactccctgtgtcaagcacgaaccgttcactaaataatatgaacccctttac |
27021264 |
T |
|
| Q |
216 |
aagtttatgagagtgagaaagtaccattatgtttatttctatgttac |
262 |
Q |
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| T |
27021265 |
aaaattatgagagtgagaaagtaccattatgtttatttctatgttac |
27021311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 34591106 - 34591049
Alignment:
| Q |
259 |
ttactacttatggtcattaaagagtgtcccagaggcactcgttagcatttcccgaatt |
316 |
Q |
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|||||| | |||||| ||||||||||| |||||| ||||||||| |||||||| |||| |
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| T |
34591106 |
ttactattaatggtccttaaagagtgttccagagacactcgttaacatttccctaatt |
34591049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 47560714 - 47560764
Alignment:
| Q |
259 |
ttactacttatggtcattaaagagtgtcccagaggcactcgttagcatttc |
309 |
Q |
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| T |
47560714 |
ttactatttatggtccttaaagagtgtctcagaggcactcgttaacatttc |
47560764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 32692969 - 32692912
Alignment:
| Q |
259 |
ttactacttatggtcattaaagagtgtcccagaggcactcgttagcatttcccgaatt |
316 |
Q |
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|||||| | |||||| |||||||||||||| ||||||||||||| |||||||| |||| |
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| T |
32692969 |
ttactattaatggtccttaaagagtgtcccggaggcactcgttaacatttccctaatt |
32692912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 25881546 - 25881494
Alignment:
| Q |
259 |
ttactacttatggtcattaaagagtgtcccagaggcactcgttagcatttccc |
311 |
Q |
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||||||||||||||| ||||| ||||| |||| ||||||||||| |||||||| |
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| T |
25881546 |
ttactacttatggtccttaaacagtgttccaggggcactcgttaacatttccc |
25881494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 3882705 - 3882757
Alignment:
| Q |
259 |
ttactacttatggtcattaaagagtgtcccagaggcactcgttagcatttccc |
311 |
Q |
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|||||||||||||| |||||||||||||| | ||||||||||| |||||||| |
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| T |
3882705 |
ttactacttatggttcttaaagagtgtcccgggggcactcgttaacatttccc |
3882757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 2568958 - 2568994
Alignment:
| Q |
275 |
ttaaagagtgtcccagaggcactcgttagcatttccc |
311 |
Q |
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|||||||||||||| ||||||||||||| |||||||| |
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| T |
2568958 |
ttaaagagtgtcccggaggcactcgttaacatttccc |
2568994 |
T |
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