View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_23 (Length: 337)
Name: NF16727_low_23
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 48179762 - 48179429
Alignment:
| Q |
1 |
taagataaacgaagtagcttcaaattaaatcaagggatagtatatatactatttgttttatatatatgtttgagcatgcttttagaaaacataagtccga |
100 |
Q |
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| T |
48179762 |
taagataaacgaagtagcttcaaattaaatcaagggatagtatatatactatttgttttatatatatgtttgagcatgcttttagaaaacataagtccga |
48179663 |
T |
|
| Q |
101 |
cattggtgtgtcacttttgagaccaaaa-tttgaattgctttcaacaattgaaagatgtaacccaactatctttgtctgtcatttgttttatgttattat |
199 |
Q |
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| T |
48179662 |
cattggtgtgtcacttttgagaccaaaaatttgaattgctttcaacaattgaaagatgtaacccaactatctttgtctgtcatttgttttatgttattat |
48179563 |
T |
|
| Q |
200 |
gtaaagactcatattcatacacgatttctgattgcatgcctgttataatcaaacaatccagctctcgtgatgttttgatcctttggatttccaaccacaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48179562 |
gtaaagactcatattcatacacgatttctgattgcatgcctgttataatcaaacaatccagctctcgtgatgttttgatcctttggatttccaaccacaa |
48179463 |
T |
|
| Q |
300 |
aaacctaaccaaattctactgtcgtgtgttttct |
333 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
48179462 |
aaacctaaccaaattctactgtcgtgtgttttct |
48179429 |
T |
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