View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_25 (Length: 314)
Name: NF16727_low_25
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 39569079 - 39569376
Alignment:
| Q |
1 |
agctgaagtttgcataagcaggtatatggaatggatccattgaaaaattgagagtttagcaattaggaatttgtctaattatgtgttgtagctagaaaaa |
100 |
Q |
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| T |
39569079 |
agctgaagtttgcataagcaggtatatggaatggatccattgaaaaattgagagtttagcaattaggaatttgtctaattatgtgttgtagctagaaaaa |
39569178 |
T |
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| Q |
101 |
gagagaggaaatgaaagctaaagaatatgtttaatgggtttgttt-gagtttgagtttgaggtttcctatgtgatgtattatatagtgtggaaaagtaat |
199 |
Q |
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| T |
39569179 |
gagagaggaaatgaaagctaaagaatatgattaatgggtttgttttgagtttgagtttgaggtttcctatgtgatgtattatatagtgtggaaaagtaat |
39569278 |
T |
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| Q |
200 |
taattaaatcggaaatgctttccatgaaggagctcttatccttgatcactaatataaaatataagacacagtagctatccagtatctcagtagtgatt |
297 |
Q |
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| T |
39569279 |
taattaaatcggaaatgctttccatgaaggagctcttatccttgagcactaatataaaatataagacacagtagctatccagtatctcagtagtgatt |
39569376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 39585033 - 39584882
Alignment:
| Q |
1 |
agctgaagtttgcataagcaggtatatggaatggatccattgaaaaattgagagtttagcaattagga--atttgtctaattatgtgttgtagctagaaa |
98 |
Q |
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| T |
39585033 |
agctgaagtttgcataagctggtatatgggatggatccattgaaaatttgagagtatag---ttaggaatatgtgtctagttatgtgttgcagttagaaa |
39584937 |
T |
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| Q |
99 |
aagagagaggaaatgaaagctaaagaatatgtttaatgggtttgtttgagtttgagtt |
156 |
Q |
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| T |
39584936 |
a--ggagaggaaattaaagct-aagaatatattgaagtggtttgtttgagtttgagtt |
39584882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 39571896 - 39572138
Alignment:
| Q |
1 |
agctgaagtttgcataagcaggtatatggaatggatccattgaaaaattgagagtttagcaa-ttaggaatttgtctaattatgtgttgtagctagaaaa |
99 |
Q |
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| T |
39571896 |
agctgaaatttacataagcagttatatgagatggatccattgagttattgagagtatagctagttaggaatttgtctagttatgtgttttagctagaaaa |
39571995 |
T |
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| Q |
100 |
agagagaggaaatgaaagctaaagaatatgtttaatgggtttgtttgagtttgagtttgaggtttcctatgtgatgtattatatagtgtggaaaagtaat |
199 |
Q |
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| T |
39571996 |
a-agagaggaaattgaaggt-aagaatatg--aaaaaggttggtttgagtttgaatt----gtt--gtaggtgatgtattatatagtgttgaaa------ |
39572079 |
T |
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| Q |
200 |
taattaaatcggaaatgctttccatgaaggagctcttatccttgatcactaatataaaat |
259 |
Q |
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| T |
39572080 |
-aagtaaattggaaatgctttacaggaagctgctcttatccttgaacactaatataaaat |
39572138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 39566420 - 39566505
Alignment:
| Q |
3 |
ctgaagtttgcataagcaggtatatggaatggatccattgaaaaattgagagtttagc-aattaggaatttgtctaattatgtgtt |
87 |
Q |
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| T |
39566420 |
ctgaagtttgcataagcagatatgtgggatggatccatcgaaaaattgagagtatagctaaataggaatttgtctagttatatgtt |
39566505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 39581392 - 39581203
Alignment:
| Q |
3 |
ctgaagtttgcataagcaggtatatggaatggatccattgaaaaattgagagtttagcaattaggaatttgtctaattatgtgttg----tagctagaaa |
98 |
Q |
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| T |
39581392 |
ctgaagtttgcataagcagatatgtggcatggatccattgaaaaattgagag--tagc---taggaatgtttcttgttatgtgttgtagatagctagaag |
39581298 |
T |
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| Q |
99 |
aag--agagaggaaatgaaagctaaagaatatgtttaatgggtttgtttgagtttgagtttgaggtttcctatgtgatgtattatatagtgtggaaaa |
194 |
Q |
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| T |
39581297 |
aagaaaaagaggaaagtaaagctaaagaatatattgaagggttttgtt---gtttgagtttaagttgttgtatgcgatgcattatatagtgtggaaaa |
39581203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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