View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16727_low_26 (Length: 297)
Name: NF16727_low_26
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 23 - 265
Target Start/End: Original strand, 39369911 - 39370153
Alignment:
| Q |
23 |
aagtatgttgcatattcaataatttttgtaaatcctccaagtgttacttttccttgtctaactgctaatttgatttcaggatttccaagatgttgctgga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39369911 |
aagtatgttgcatattcaataatttttgtaaatcctccaagtgttacttttccttgtctaactgctaatttgatttcaggatttccaagatgttgctgga |
39370010 |
T |
|
| Q |
123 |
cctccaatatttctcttgacatctaaggttggtagtataggattgacacttacaagagcagatcgtgtgattgtagttgatcctgattggaacccaaggt |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39370011 |
cctccaatatttctcttgacatctaaggttggtggtataggattgacacttacaagagcagatcgtgttattgtagttgatcctgattggaacccaaggt |
39370110 |
T |
|
| Q |
223 |
acatcttaaagtattccttttcctcgacattaaaataatattg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39370111 |
acatcttaaagtattccttttcctcgacattaaaataatattg |
39370153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 39355916 - 39356145
Alignment:
| Q |
13 |
ttgttgatgtaagtatgttgcatattcaataatttttgtaaatcctccaagtgttacttttccttgtctaactgctaatttgatttcaggatttccaaga |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| || |||||||||||| ||| | ||||||| ||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
39355916 |
ttgttgatgtaagtattttgcatattcagtaacggttttaaatcctccaattgtcatttttcctcgtctaactgttaatttgatttcaggattttcaaga |
39356015 |
T |
|
| Q |
113 |
tgttgctggacctccaatatttctcttgacatctaaggttggtagtataggattgacacttacaagagcagatcgtgtgattgtagttgatcctgattgg |
212 |
Q |
| |
|
|| || |||| ||||||||||||| |||||||| | |||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
39356016 |
tggtgttggagctccaatatttctgctgacatctcaagttggtggtttaggactgacacttacaagagcagatcgtgtgattgttgttgatcctgcttgg |
39356115 |
T |
|
| Q |
213 |
aacccaaggtacatcttaaagtattccttt |
242 |
Q |
| |
|
||||| |||||| |||| || ||||||||| |
|
|
| T |
39356116 |
aaccctaggtacttcttgaaatattccttt |
39356145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University