View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_30 (Length: 281)
Name: NF16727_low_30
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 42795238 - 42795508
Alignment:
| Q |
1 |
tctcgttgtcatcaattgctttcaaatgatgcttgggtgtacgaatcaaactcatagaaaaacattatcgactgcttattacctaggtgaataaatgctt |
100 |
Q |
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| T |
42795238 |
tctcattgtcatcaattgctttcaaatgatgcttgggtgtacgaatcaaactcatagaaaaacattatcgactgcttattacctaggtgaataaatgctt |
42795337 |
T |
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| Q |
101 |
aagtaatgatgattaattccctnnnnnnnnn-gtaatgatgattagtcattcttattcttattgagaccaaccaagtttaattgacaagtgacattatta |
199 |
Q |
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| T |
42795338 |
aagtaatgatgattaattccctaaaaaaaaaagtaatgatgattagtcattcttattcttattgagaccaaccaagtttaattgacaagtgacattatta |
42795437 |
T |
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| Q |
200 |
agtacgaacgttctaaatttatgtaaaaacttggagggccatatcttcgagaagaagatacattgtagtat |
270 |
Q |
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| T |
42795438 |
agtacgaacgttctaaatttatgtaaaaacttggagggccatatcttcgagaagaagatacattgtagtat |
42795508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 42795518 - 42795568
Alignment:
| Q |
206 |
aacgttctaaatttatgtaaaaacttggagggccatatcttcgagaagaaga |
257 |
Q |
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| T |
42795518 |
aacgttctaaatttatgtaaaaacttgga-ggtcatatctttgagaagaaga |
42795568 |
T |
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