View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_33 (Length: 263)
Name: NF16727_low_33
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 48179414 - 48179171
Alignment:
| Q |
9 |
taattcagttatcgattgagtgggaaatatttatattttataactttccagatatcctcatgttaatttaattattcgatctacatgtctcttggataaa |
108 |
Q |
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| T |
48179414 |
taattcagttatcgattgagtgggaaatatttatattttataactttccagatatcctcatgttaatt-aattattcgatctacatgtctcttggataaa |
48179316 |
T |
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| Q |
109 |
ctatatatatacgagtctggctttgaaaaaatgtttctataagagtgaat----tgaccttacccacccaatcagtattaaataaatggatgatatgatt |
204 |
Q |
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| T |
48179315 |
ctatatatatacgagtctggctttgaaaaa-tgtttctataagagtgaatatattgaccttacccacccaatcagtattaaataaatggatgatatgatt |
48179217 |
T |
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| Q |
205 |
ttagaatttaagaagtcaaattaataatatcatcaaacatcattag |
250 |
Q |
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| T |
48179216 |
ttagaatttaagaagtcaaattaataatatcatcaaacatcattag |
48179171 |
T |
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