View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_34 (Length: 263)
Name: NF16727_low_34
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_34 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 28243059 - 28243319
Alignment:
| Q |
1 |
aaaaaatacacggtctttcccttcttctttcttttgttccaattaagcaatatcacttccttcaagtaatttaacctttgttcctgaaaaggtcaatcat |
100 |
Q |
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| T |
28243059 |
aaaaaatacacggtctttaccttcttctttcttttgttccaattaagcaatatcacttccttcaagtaatttaacctttgttcctgaaaaggtcaatcat |
28243158 |
T |
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| Q |
101 |
taggaataccaggatctttctcaaccttcttcttattacttaattttgaaagggtgcgctacatcatgataaaaacaaacgcagatcttgtcaatgacga |
200 |
Q |
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| T |
28243159 |
taggaataccaggatctttctcaaccttcttcttattacttaattttgaaagggtgcgctacatcatgataaaaacaaacgcagatcttatcaatgacga |
28243258 |
T |
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| Q |
201 |
gcaaatattttttctaggcactctattatatatgttttctccaaatcaatgaaaattaagtgc |
263 |
Q |
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| T |
28243259 |
gccaatattttttctaggcactctat--tatatgttttctacaaatcaatgaaaattaagtgc |
28243319 |
T |
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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 18178262 - 18178328
Alignment:
| Q |
79 |
tgttcctgaaaaggtcaatcattaggaataccaggatctttctcaaccttcttcttattacttaatt |
145 |
Q |
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| T |
18178262 |
tgttccttaaaaggccaatcatttggaataccaggatctttctcaaccttcttcttaccacttaatt |
18178328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 20369077 - 20369011
Alignment:
| Q |
79 |
tgttcctgaaaaggtcaatcattaggaataccaggatctttctcaaccttcttcttattacttaatt |
145 |
Q |
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| T |
20369077 |
tgttccttgaaaggccaatcatttggaatgccaggatctttctcaaccttcctcttaccacttaatt |
20369011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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