View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_36 (Length: 255)
Name: NF16727_low_36
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 70 - 248
Target Start/End: Original strand, 8767352 - 8767526
Alignment:
| Q |
70 |
ggtcctgcatctatatgtgtgtgttttaatttttggtatgagaatatgatgtttttgtctatatcttaaacattggtatatatgttagcttattttgatt |
169 |
Q |
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| T |
8767352 |
ggtcctgcatcaatatgtgtgtgttttaatttttggtatgagaataagatgtttttgtctatatcttaaacattggtat----gttagcttattttgatt |
8767447 |
T |
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| Q |
170 |
tatataaattgattagtatacatatacgtacattgttagattatagaactttgaatgttcaactgcttccatggtaaat |
248 |
Q |
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| T |
8767448 |
tatataaattgattattatacatatacgtacattgtaagattatagaactttgaatgttcaactgcttccatggtaaat |
8767526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8767283 - 8767317
Alignment:
| Q |
1 |
acttttcgggttcacttccatccttcacactccca |
35 |
Q |
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| T |
8767283 |
acttttcgggttcacttccatccttcacactccca |
8767317 |
T |
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