View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_38 (Length: 244)
Name: NF16727_low_38
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 12492504 - 12492272
Alignment:
| Q |
1 |
ccttcttgttttaccacggttcttatctcatttgcgagttctttgtgaagctcttcgccggatgaacctaaccatttgaagaggatcgggaattgattct |
100 |
Q |
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| T |
12492504 |
ccttcttgttttaccacggttcttatctcgtttgcgagttctttgtgaagctcttcgccagatgaacctaaccatttgaagaggattgggaattgattct |
12492405 |
T |
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| Q |
101 |
ttaggccaccgtatgcattgaagcctgcggtgaaaatgatattgtggagagcttcgcttctttttaaaccggctttttcggcttcgtttaacattgttgt |
200 |
Q |
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| T |
12492404 |
ttaggccaccgtatgcattgaagcctgcggtgaaaatgatattgtggagagcttcgcttctttttaaaccggctttttcggcttcgtttaacattgttgt |
12492305 |
T |
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| Q |
201 |
agctgaagtagaaaatgcttcatagagcttctt |
233 |
Q |
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| T |
12492304 |
agctgaagtagaaaatgcttcatagagcttctt |
12492272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 12507426 - 12507202
Alignment:
| Q |
9 |
ttttaccacggttcttatctcatttgcgagttctttgtgaagctcttcgccggatgaacctaaccatttgaagaggatcgggaattgattctttaggcca |
108 |
Q |
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| T |
12507426 |
ttttacaatggttcttatctcgtttgcgagttctttgtgtagctcttcgccgcataaacctatccatttgaagagtattgggaattgattctttaatccg |
12507327 |
T |
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| Q |
109 |
ccgtatgcattgaagcctgcggtgaaaatgatattgtggagagcttcgcttctttttaaaccggctttttcggcttcgtttaacattgttgtagctgaag |
208 |
Q |
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| T |
12507326 |
ccgtatccattgaagcctgccatgaaaatgagattgtgacaggcttcacttcttttcaaccctgctttttctgcatcgtttaaaatcgttacagctgaag |
12507227 |
T |
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| Q |
209 |
tagaaaatgcttcatagagcttctt |
233 |
Q |
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|||||||||||| ||||||||||| |
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| T |
12507226 |
aagaaaatgcttcgtagagcttctt |
12507202 |
T |
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