View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_41 (Length: 239)
Name: NF16727_low_41
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_41 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 42795034 - 42795254
Alignment:
| Q |
19 |
ggtacgtctccgttttggagtatctgggcttcatagctatcttttaaagtgttctcacttgaattaaacattttactgaactgcctcttaagaacatctc |
118 |
Q |
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| T |
42795034 |
ggtacgtctccgttttggagtattcgggcttcatagctatcttttaaagtgttctcacttgaattaaacattttactgaactgcttcttaagaacatctc |
42795133 |
T |
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| Q |
119 |
atattgatattacaaattaagtgtgggcctattttgattattaccccgttaaaacggaaaaattagggccacaaagtgaaaattattgagaaccttgaaa |
218 |
Q |
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| T |
42795134 |
atattgatattacaaattaagtgtgggcctattttgattattactccgttaaaacggaaaaattagggccacaaagtgaaaattattgagaaccttgaaa |
42795233 |
T |
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| Q |
219 |
gtaatctcattgtcatcaatt |
239 |
Q |
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| T |
42795234 |
gtaatctcattgtcatcaatt |
42795254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 17328548 - 17328513
Alignment:
| Q |
19 |
ggtacgtctccgttttggagtatctgggcttcatag |
54 |
Q |
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| T |
17328548 |
ggtacgtctccgttttggagtatctgtgcttcatag |
17328513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 24728823 - 24728857
Alignment:
| Q |
20 |
gtacgtctccgttttggagtatctgggcttcatag |
54 |
Q |
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| T |
24728823 |
gtacgtctccgttttggagtatccgggcttcatag |
24728857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 45661739 - 45661701
Alignment:
| Q |
17 |
caggtacgtctccgttttggagtatctgggcttcatagc |
55 |
Q |
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| T |
45661739 |
caggtacgtctccattttggagtatctggacttcatagc |
45661701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 7056936 - 7056895
Alignment:
| Q |
17 |
caggtacgtctccgttttggagtatctgggcttcatagctat |
58 |
Q |
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| T |
7056936 |
caggtacgtctccgttttggagtatccagacttcatagctat |
7056895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 7629473 - 7629506
Alignment:
| Q |
21 |
tacgtctccgttttggagtatctgggcttcatag |
54 |
Q |
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| T |
7629473 |
tacgtctccgttttggagtatccgggcttcatag |
7629506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 17116077 - 17116044
Alignment:
| Q |
20 |
gtacgtctccgttttggagtatctgggcttcata |
53 |
Q |
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| T |
17116077 |
gtacgtctccgttttggagtatttgggcttcata |
17116044 |
T |
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