View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_43 (Length: 237)
Name: NF16727_low_43
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 4364438 - 4364646
Alignment:
| Q |
13 |
attattctgtaacctcaaaattgatgaagtacttactatgataacattacccaaataatctgtaaatctgtcacgaaagcttctcatataatcggagtag |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||| |||||||||||||||||||||||| |
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| T |
4364438 |
attactctgtaacctcaaaattgatgaagtacttactatgataacattgcccaaataatctgtgaacctatcacggaagcttctcatataatcggagtag |
4364537 |
T |
|
| Q |
113 |
acttgaagtggagttcttcctgctagaacaggcactgaatcacatcccaatgagatgtattctggatttcttcttcctaatttgtctgtgtaaaccaact |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364538 |
acttgaagtggagttcttcctgctagaacaggcactgaatcacatcccaatgagatgtattctggatttcttcttcctaatttgtctgtgtaaaccaact |
4364637 |
T |
|
| Q |
213 |
cagggttct |
221 |
Q |
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||||||||| |
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| T |
4364638 |
cagggttct |
4364646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 43 - 221
Target Start/End: Original strand, 4372060 - 4372238
Alignment:
| Q |
43 |
acttactatgataacattacccaaataatctgtaaatctgtcacgaaagcttctcatataatcggagtagacttgaagtggagttcttcctgctagaaca |
142 |
Q |
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|||||||||||||||||| |||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372060 |
acttactatgataacattgcccaaataatctgtgaacctatcacggaagcttctcatataatcggagtagacttgaagtggagttcttcctgctagaaca |
4372159 |
T |
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| Q |
143 |
ggcactgaatcacatcccaatgagatgtattctggatttcttcttcctaatttgtctgtgtaaaccaactcagggttct |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372160 |
ggcactgaatcacatcccaatgagatgtattctggatttcttcttcctaatttgtctgtgtaaaccaactcagggttct |
4372238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 41043052 - 41042908
Alignment:
| Q |
77 |
aatctgtcacgaaagcttctcatataatcggagtagacttgaagtggagttcttcctgctagaacaggcactgaatcacatcccaatgagatgtattctg |
176 |
Q |
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||||||||||||||||| ||||| || || | || ||||| || |||||||||||| |||||||||||||||||||||||||||||| ||||| || | |
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| T |
41043052 |
aatctgtcacgaaagctcctcatgtagtcagcatacacttggaggggagttcttccttttagaacaggcactgaatcacatcccaatgatatgtactcag |
41042953 |
T |
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| Q |
177 |
gatttcttcttcctaatttgtctgtgtaaaccaactcagggttct |
221 |
Q |
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||||||| || ||| || ||||||||||||| | |||||||||| |
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| T |
41042952 |
gatttctcctccctgatctgtctgtgtaaacaatgtcagggttct |
41042908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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