View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16727_low_46 (Length: 224)

Name: NF16727_low_46
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16727_low_46
NF16727_low_46
[»] chr3 (4 HSPs)
chr3 (13-209)||(40690214-40690410)
chr3 (31-125)||(1829215-1829307)
chr3 (37-74)||(47930131-47930168)
chr3 (34-126)||(46547748-46547839)
[»] chr8 (3 HSPs)
chr8 (31-93)||(39691114-39691176)
chr8 (31-102)||(41105990-41106060)
chr8 (34-74)||(4166542-4166582)
[»] chr7 (5 HSPs)
chr7 (31-85)||(18926371-18926425)
chr7 (40-128)||(10419926-10420012)
chr7 (31-88)||(34681736-34681793)
chr7 (34-74)||(31902768-31902808)
chr7 (31-75)||(35599820-35599864)
[»] chr1 (6 HSPs)
chr1 (31-101)||(5423739-5423808)
chr1 (34-88)||(44442297-44442351)
chr1 (34-87)||(40053340-40053393)
chr1 (38-74)||(4540768-4540804)
chr1 (34-86)||(46123956-46124008)
chr1 (34-86)||(48947251-48947303)
[»] chr4 (4 HSPs)
chr4 (31-93)||(48097996-48098058)
chr4 (34-93)||(45743362-45743421)
chr4 (34-74)||(5839574-5839614)
chr4 (34-74)||(41370187-41370227)
[»] chr2 (7 HSPs)
chr2 (34-96)||(33455015-33455076)
chr2 (34-93)||(13538443-13538502)
chr2 (36-74)||(11944892-11944930)
chr2 (34-86)||(16944812-16944864)
chr2 (34-86)||(17015477-17015529)
chr2 (37-93)||(33898645-33898701)
chr2 (34-74)||(33962962-33963002)
[»] chr6 (3 HSPs)
chr6 (32-88)||(25028703-25028759)
chr6 (36-86)||(1479099-1479149)
chr6 (34-74)||(12735500-12735540)
[»] chr5 (1 HSPs)
chr5 (31-93)||(24041023-24041085)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 40690214 - 40690410
Alignment:
Q  13 attattctttgaaaaatgtagttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaagatcctttaaagagtatctgtggaca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||    
T  40690214 attattctttgaaaaatgtagttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaagactctttaaagagtatctgtgggca 40690313  T
Q  113 ctcattaacatttctcatctactaatatcattctctaacatgggagtgtttaagtatccaaaaatatcaacttttacaatgaaaattatattattat 209  Q
    ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40690314 ctcgttaatatttctcatctactaatatcattctctaacatgggagtgtttaagtatccaaaaatatcaacttttacattgaaaattatattattat 40690410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 1829307 - 1829215
Alignment:
Q  31 tagttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaagatcctttaaagagtatctgtggacactcattaacattt 125  Q
    ||||| ||||||||||  | ||||||||||| |||||  |||||| |||||||| | |||| |||||||| ||||| |||||||| |||||||||    
T  1829307 tagtttaattttcaatgtactgaatacacaaattttcgcaaaaagttaccattttaaatcc-ttaaagagcatctg-ggacactcgttaacattt 1829215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 47930131 - 47930168
Alignment:
Q  37 aattttcaatacattgaatacacaagttttcataaaaa 74  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  47930131 aattttcaatacattaaatacacaaattttcataaaaa 47930168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 46547839 - 46547748
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaagatcctttaaagagtatctgtggacactcattaacatttc 126  Q
    |||||||| |||| ||||||||||| || ||||||||||||  ||| || ||||| || ||||||||| || | | |||||| ||||||||||    
T  46547839 ttcaatttccaatgcattgaatacataatttttcataaaaaattactatataaga-cccttaaagagtgtccgggaacactcgttaacatttc 46547748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 39691176 - 39691114
Alignment:
Q  31 tagttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaagatcctt 93  Q
    |||||||||||||||| |||||||||||||| ||||||||||||  ||| |||||||||||||    
T  39691176 tagttcaattttcaatgcattgaatacacaaattttcataaaaaattactatttaagatcctt 39691114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 41106060 - 41105990
Alignment:
Q  31 tagttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaagatcctttaaagagta 102  Q
    |||||||||||||||| |||||||| ||||| ||||| ||||||  ||||||||||| ||| ||||||||||    
T  41106060 tagttcaattttcaatgcattgaattcacaatttttcgtaaaaacttaccatttaaggtcc-ttaaagagta 41105990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 4166542 - 4166582
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaa 74  Q
    |||||||| ||||||||||||| ||||||||| ||||||||    
T  4166542 ttcaatttccaatacattgaatgcacaagtttccataaaaa 4166582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 18926371 - 18926425
Alignment:
Q  31 tagttcaattttcaatacattgaatacacaagttttcataaaaagctaccattta 85  Q
    |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  18926371 tagttcaattttcaatgcattgaatacacaacttttcataaaaagttaccattta 18926425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 10419926 - 10420012
Alignment:
Q  40 tttcaatacattgaatacacaagttttcataaaaagctaccatttaagatcctttaaagagtatctgtggacactcattaacatttctc 128  Q
    ||||||||||||||||||||| ||||| |||||||| || |||||||||| | ||||||| | | |  |||||||||||||||||||||    
T  10419926 tttcaatacattgaatacacatgtttttataaaaagatatcatttaagattc-ttaaagaatgt-tcaggacactcattaacatttctc 10420012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 34681736 - 34681793
Alignment:
Q  31 tagttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaaga 88  Q
    ||||||||||| |||| |||| |||||||||||||| |||||||| ||| ||||||||    
T  34681736 tagttcaatttccaatgcattaaatacacaagtttttataaaaagttactatttaaga 34681793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 31902808 - 31902768
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaa 74  Q
    |||||||||||||||||||| ||||||| ||| ||||||||    
T  31902808 ttcaattttcaatacattgactacacaattttccataaaaa 31902768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 35599864 - 35599820
Alignment:
Q  31 tagttcaattttcaatacattgaatacacaagttttcataaaaag 75  Q
    |||||||| ||||||| ||||||||||| || |||||||||||||    
T  35599864 tagttcaaatttcaatgcattgaatacataacttttcataaaaag 35599820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 5423808 - 5423739
Alignment:
Q  31 tagttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaagatcctttaaagagt 101  Q
    |||||||||||||||| |||| |||||| |||||||||||||||  |||||||||||| ||||||||||||    
T  5423808 tagttcaattttcaatgcattaaatacataagttttcataaaaaattaccatttaaga-cctttaaagagt 5423739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 44442297 - 44442351
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaaga 88  Q
    |||||||||||||||||| ||||||||  |||| |||||||| ||| ||||||||    
T  44442297 ttcaattttcaatacattaaatacacatatttttataaaaagttactatttaaga 44442351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 40053340 - 40053393
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaag 87  Q
    |||||||||||||||||| | |||||||  |||||||||||| ||| |||||||    
T  40053340 ttcaattttcaatacatttattacacaaactttcataaaaagttactatttaag 40053393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 4540804 - 4540768
Alignment:
Q  38 attttcaatacattgaatacacaagttttcataaaaa 74  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  4540804 atttccaatacattgaatacacaaattttcataaaaa 4540768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 46124008 - 46123956
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaa 86  Q
    |||||||||||||||||| | ||||||| |||| || ||||| ||||||||||    
T  46124008 ttcaattttcaatacatttattacacaattttttattaaaagttaccatttaa 46123956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 48947251 - 48947303
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaa 86  Q
    |||||||| |||| || ||| ||||||| ||||||||||||| ||||||||||    
T  48947251 ttcaatttccaatgcactgattacacaaattttcataaaaagttaccatttaa 48947303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 48097996 - 48098058
Alignment:
Q  31 tagttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaagatcctt 93  Q
    ||||||||||| ||||||||| |||||||| ||||| |||||||| ||| |||||||| ||||    
T  48097996 tagttcaatttccaatacattaaatacacatgtttttataaaaagttactatttaagaacctt 48098058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 45743362 - 45743421
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaagatcctt 93  Q
    |||||||||||||||| ||| ||||||| |||||||||| || ||| |||||||| ||||    
T  45743362 ttcaattttcaatacagtgattacacaacttttcataaagagttactatttaagaccctt 45743421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 5839574 - 5839614
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaa 74  Q
    ||||| |||||||||||| ||||||||| ||||||||||||    
T  5839574 ttcaaatttcaatacattaaatacacaaattttcataaaaa 5839614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 41370227 - 41370187
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaa 74  Q
    ||||||||||||| |||||| ||||||| ||||||||||||    
T  41370227 ttcaattttcaatgcattgattacacaaattttcataaaaa 41370187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 33455015 - 33455076
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaagatcctttaa 96  Q
    |||||||| ||||||||||| ||||||| ||||||||||||| ||| ||||||| ||||||||    
T  33455015 ttcaatttacaatacattgattacacaacttttcataaaaagttactatttaag-tcctttaa 33455076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 13538443 - 13538502
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaagatcctt 93  Q
    |||||||| |||| ||||||||||| || ||||||||||||| ||| |||||||| ||||    
T  13538443 ttcaatttccaatgcattgaatacataacttttcataaaaagttactatttaagaccctt 13538502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 11944930 - 11944892
Alignment:
Q  36 caattttcaatacattgaatacacaagttttcataaaaa 74  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  11944930 caattttcaatgcattgaatacacaacttttcataaaaa 11944892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 16944812 - 16944864
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaa 86  Q
    |||||||||||||  ||||||||||||| |||| |||||||  ||||||||||    
T  16944812 ttcaattttcaatgtattgaatacacaaatttttataaaaacttaccatttaa 16944864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 17015477 - 17015529
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaa 86  Q
    |||||||||||||  ||||||||||||| |||| |||||||  ||||||||||    
T  17015477 ttcaattttcaatgtattgaatacacaaatttttataaaaacttaccatttaa 17015529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 33898701 - 33898645
Alignment:
Q  37 aattttcaatacattgaatacacaagttttcataaaaagctaccatttaagatcctt 93  Q
    ||||||||||||||  | ||||||| |||| |||||||| ||||||||||| |||||    
T  33898701 aattttcaatacatccattacacaaatttttataaaaagttaccatttaaggtcctt 33898645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 33963002 - 33962962
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaa 74  Q
    ||||||||||||| |||||||| ||||| ||||||||||||    
T  33963002 ttcaattttcaatgcattgaatgcacaatttttcataaaaa 33962962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 25028759 - 25028703
Alignment:
Q  32 agttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaaga 88  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||| ||  ||||||||    
T  25028759 agttcaattttcaatgcattgaatacacacgtttttataaaaagttaaaatttaaga 25028703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 1479149 - 1479099
Alignment:
Q  36 caattttcaatacattgaatacacaagttttcataaaaagctaccatttaa 86  Q
    ||||||||||| |||||||||||||| ||| ||||||||  ||||||||||    
T  1479149 caattttcaatgcattgaatacacaattttacataaaaatttaccatttaa 1479099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 12735540 - 12735500
Alignment:
Q  34 ttcaattttcaatacattgaatacacaagttttcataaaaa 74  Q
    |||||||||| ||||||| ||||||||| ||||||||||||    
T  12735540 ttcaattttcgatacattaaatacacaaattttcataaaaa 12735500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 24041085 - 24041023
Alignment:
Q  31 tagttcaattttcaatacattgaatacacaagttttcataaaaagctaccatttaagatcctt 93  Q
    ||||| ||||| ||||||||| |||||| || ||||||||||||| ||| |||||||| ||||    
T  24041085 tagtttaatttccaatacattaaatacataacttttcataaaaagttactatttaagaccctt 24041023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University