View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_47 (Length: 222)
Name: NF16727_low_47
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 12492493 - 12492698
Alignment:
| Q |
1 |
aaaacaagaaggcggagtaacaattcagtcgttagaaaaaatgccgttagttaaatcagttgtctatgaagcgatgcgaattgaacctgctgtgccttat |
100 |
Q |
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| T |
12492493 |
aaaacaagaaggcggagtaacaattcagtcgttagaaaaaatgccgttagttaaatcagttgtctatgaagcgatgcgaattgaacctgctgtgccttat |
12492592 |
T |
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| Q |
101 |
caatatgcaaaagcaagagaagatttaattgtgaagagtcacgacgcggcttttgaaataaaaaagggtgagatgatatttggataccaacctttcgcga |
200 |
Q |
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| T |
12492593 |
caatatgcaaaagcaagagaagatttaatcgtgaagagtcacgacgcggcttttgaaataaaaaagggtgagatgatatttggataccaacctttcgcga |
12492692 |
T |
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| Q |
201 |
caaaag |
206 |
Q |
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|||||| |
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| T |
12492693 |
caaaag |
12492698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 12507430 - 12507617
Alignment:
| Q |
8 |
gaaggcggagtaacaattcagtcgttagaaaaaatgccgttagttaaatcagttgtctatgaagcgatgcgaattgaacctgctgtgccttatcaatatg |
107 |
Q |
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|||||||| ||||||||||||||||||||||||||| | ||||||||||| ||||| ||||||| || | |||||||||| || | ||||||||||| |
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| T |
12507430 |
gaaggcggggtaacaattcagtcgttagaaaaaatgtcattagttaaatccgttgtttatgaagttttgaggattgaacctgtcgttcgttatcaatatg |
12507529 |
T |
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| Q |
108 |
caaaagcaagagaagatttaattgtgaagagtcacgacgcggcttttgaaataaaaaagggtgagatgatatttggataccaaccttt |
195 |
Q |
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| T |
12507530 |
caaaagcaagagaagatttaattgtgaagagtcacgatgcagcttttgaaattaaaaagggtgagatgattttcgggtaccaatcttt |
12507617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 25733138 - 25733266
Alignment:
| Q |
78 |
gaattgaacctgctgtgccttatcaatatgcaaaagcaagagaagatttaattgtgaagagtcacgacgcggcttttgaaataaaaaagggtgagatgat |
177 |
Q |
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|||||||||||||||| || ||||||||||| ||||| || || ||| || | ||| |||| || || || ||||||| || || || ||||| ||||| |
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| T |
25733138 |
gaattgaacctgctgttccatatcaatatgctaaagctagggaggatctagtggtgcagagccatgatgcatcttttgagatcaagaaaggtgaaatgat |
25733237 |
T |
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| Q |
178 |
atttggataccaacctttcgcgacaaaag |
206 |
Q |
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| T |
25733238 |
ctttggatatcaaccgttcgctacaaaag |
25733266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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