View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_48 (Length: 222)
Name: NF16727_low_48
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 39569542 - 39569734
Alignment:
| Q |
15 |
caaaggtataagattagaataaacaaggtttttagtgtactaaactagaaggattgaatgctggcttcaacttagaatcatcgaaaaagctaggatcttc |
114 |
Q |
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| T |
39569542 |
caaaggtataagattagaataaacaaggtttttagtgtactaaactagaaggattgaatgctggcttcaacttagaatcatcgaaaaagctaggatcttc |
39569641 |
T |
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| Q |
115 |
agtaggcactgttatctatttactcatggacactagttaatgtaatgacatgtacgtcaaaagttgaatttaagtatacaaaacttttctttt |
207 |
Q |
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| T |
39569642 |
agtaggcactgttatctatttactcatggacactagttaatgtaatgacatgtacgtcaaaagttgcatttaagtatacaaaacttttctttt |
39569734 |
T |
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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 39580930 - 39580859
Alignment:
| Q |
15 |
caaaggtataagattagaataaacaaggtttttagtgtactaaactagaaggattgaatgctggcttcaact |
86 |
Q |
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| T |
39580930 |
caaaggtataagaagagaataaacagggtttttagtgtagtaaactaaaaggcttgaatgctgccctcaact |
39580859 |
T |
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