View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_49 (Length: 217)
Name: NF16727_low_49
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 35167751 - 35167567
Alignment:
| Q |
17 |
cacagataatcaacctaggcctaaaatccaacgctttctcctccaaccgatcataatcaataaaaccagtcttagaattcaccttatacggcaaactctc |
116 |
Q |
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| T |
35167751 |
cacagataatcaacctaggcctaaaatccaaggctttctcctccaaccgatcataatcaataaaaccagtcgtagaattcaccttatacggcaaactctc |
35167652 |
T |
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| Q |
117 |
aaagtaaatagaagtggccgagatcttcttcccaccggaagtatagtaaccatgagtcagatgtccacctgaaggaagatccaat |
201 |
Q |
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| T |
35167651 |
aaagtaaatagaagtggccgagatcttcttcccaccggaagtatagtaaccatgagtcagatgtccacctgaaggaagatccaat |
35167567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 38068940 - 38069122
Alignment:
| Q |
17 |
cacagataatcaacctaggcctaaaatccaacgctttctcctccaaccgatcataatcaataaaaccagtcttagaattcaccttatacggcaaactctc |
116 |
Q |
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| T |
38068940 |
cacaaataatcaacttaggtctaaaatccaaagctttctcctccaacctatcataatcaataaaccccgtggtcgaattcaccttatacggcaagctctc |
38069039 |
T |
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| Q |
117 |
aaagtaaatagaagtggccgagatcttcttcccaccggaagtatagtaaccatgagtcagatgtccacctgaaggaagatcca |
199 |
Q |
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| T |
38069040 |
aaagtaaatcgaagtagccgaaatcttcttcccaccggaagtatagtaaccatgagtcaaatgtccaccagaaggtagatcca |
38069122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 185
Target Start/End: Complemental strand, 33131023 - 33130872
Alignment:
| Q |
34 |
ggcctaaaatccaacgctttctcctccaaccgatcataatcaataaaaccagtcttagaattcaccttatacggcaaactctcaaagtaaatagaagtgg |
133 |
Q |
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|||||| |||||| ||||||||||| | | ||||||||||||| |||||||| | |||||||||||| |||||| ||||||| | ||||||| | |
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| T |
33131023 |
ggcctataatccactgctttctcctcaaccttatcataatcaatataaccagtcaatggattcaccttataaggcaaagtctcaaaaaatatagaagccg |
33130924 |
T |
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| Q |
134 |
ccgagatcttcttcccaccggaagtatagtaaccatgagtcagatgtccacc |
185 |
Q |
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| T |
33130923 |
ccgaaaccttcttcccaccatgagtataataaccatgactcaaatgtccacc |
33130872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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