View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_5 (Length: 621)
Name: NF16727_low_5
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 57 - 603
Target Start/End: Complemental strand, 4090152 - 4089607
Alignment:
| Q |
57 |
ttgagatgttgaccccagtaaaattttgagaaaatgacataactcaaagcaatcacttgtgccggtgttgtgtcagacactgacacatgttggacaccgg |
156 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4090152 |
ttgagatgttgaccccggtaaaattttgagaaaatgacataactcaaagcaatcacttgtgccggtgttgtgtcagacactgacacatgttggacaccgg |
4090053 |
T |
|
| Q |
157 |
aacataccttcaatcaaaagtgttggtgccacgcagatattatacgcaacacaaccctaacacttaaataaaccaagaaagcatttatatatttgatcaa |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4090052 |
aacataccttcaatcaaaagtgttggtgccacgcagatattatacgcaacgcaaccctaacacttaa-taaaccaagaaagcatttatatatttgatcaa |
4089954 |
T |
|
| Q |
257 |
acatccatcgatgatattaaagagaattattacctctgctgatgagtgatgaatttgaccacggagaacatcacaaactctaccaaccccaccaaactca |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4089953 |
acatccatcgatgatattaaagagaattattacctctgctgatgagtgatgaatttgaccacggagaacatcacaaactctaccaaccccaccaaactca |
4089854 |
T |
|
| Q |
357 |
agaagagacttcaagtccttctccttcacaattccagcaatatcattcgtaacgcgcagttctactgaggaaaggggtgatgtagattcttcataattag |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
4089853 |
agaagagacttcaagtccttctccttcacaattccagcaatatcattcgtaacgcgcagttctactgaggaaagaggtgatgtagattcttcatagttag |
4089754 |
T |
|
| Q |
457 |
ccctagaagttgtaggcttcttgtataaccattgaagccatttcttgttgctcacgctacctctagtagtagtgagtaaagtagcaccaagttctatgtt |
556 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4089753 |
ccctagaagttgtaggcttcttgtataaccattgaagccatttcttgttgcacacgctacctctagtagtagtgagtaaagtagcaccaagttctatgtt |
4089654 |
T |
|
| Q |
557 |
gttaccatcatctgattctgggaacatgcttggtacggaacacttgt |
603 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4089653 |
gttaccatcatctgattctgggaacatgcttggtacgtaacacttgt |
4089607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 296 - 400
Target Start/End: Original strand, 42594428 - 42594532
Alignment:
| Q |
296 |
tgatgagtgatgaatttgaccacggagaacatcacaaactctaccaaccccaccaaactcaagaagagacttcaagtccttctccttcacaattccagca |
395 |
Q |
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||||||||| ||| |||||||| | |||| |||||||||| | |||| |||||||| |||||||||||| ||||||||||||| ||||||||| ||||| |
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| T |
42594428 |
tgatgagtgttgactttgaccatgaagaaaatcacaaactatgccaatcccaccaagctcaagaagagatttcaagtccttctttttcacaatttcagca |
42594527 |
T |
|
| Q |
396 |
atatc |
400 |
Q |
| |
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||||| |
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| T |
42594528 |
atatc |
42594532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 185
Target Start/End: Original strand, 7942269 - 7942373
Alignment:
| Q |
81 |
tttgagaaaatgacataactcaaagcaatcacttgtgccggtgttgtgtcagacactgacacatgttggacaccggaacataccttcaatcaaaagtgtt |
180 |
Q |
| |
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||||||| |||||||||| |||| | |||||| |||| | ||| |||||| ||||||||||| ||| ||||||| ||| ||||| |||| ||||||| |
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| T |
7942269 |
tttgagacaatgacataattcaatgtaatcacatgtgtcagtgctgtgtcggacactgacacgtgtcggacaccacgacacaccttagatcagaagtgtt |
7942368 |
T |
|
| Q |
181 |
ggtgc |
185 |
Q |
| |
|
||||| |
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|
| T |
7942369 |
ggtgc |
7942373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 29651764 - 29651731
Alignment:
| Q |
120 |
ggtgttgtgtcagacactgacacatgttggacac |
153 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
29651764 |
ggtgtcgtgtcagacactgacacatgttggacac |
29651731 |
T |
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Back To:
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