View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_6 (Length: 612)
Name: NF16727_low_6
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 339
Target Start/End: Original strand, 25285462 - 25285789
Alignment:
| Q |
11 |
catagggcctaattaaaatgacagattgacacataactattgcaaaggagttgatgtattctcaagtaaagatcatccatttagtgaaaaaatggaaagt |
110 |
Q |
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| T |
25285462 |
catatggcctaattaaaatgacagattgacacataactattgcaaaggagttgatgtattctgaagtaaagatcatccattgagtgaaaaaatggaaagt |
25285561 |
T |
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| Q |
111 |
gc----aacatagacataccaccgacacttcgtttcaagtaaaaacaccaagatatgcatttgaagtttttaatataggcctccaaatttccaaagctgc |
206 |
Q |
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| T |
25285562 |
gcgcgcaacatagacataccaccgacacttcgtttcaagtaaaaacaccaagatatgcatttgaagtttttaatataggcctccaaatctccaaagctgc |
25285661 |
T |
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| Q |
207 |
aacatagcagttcaaagtttaaacaacattaacattcaaactgtatcaaacacatatacatatgtaatattatcctcacaataactaatttggttagtcg |
306 |
Q |
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| T |
25285662 |
aacatggcagttcaaagtttaaacaacattaacattcaaactctatcaaacacatatacatatgta-----atcctcacaataactaatttggttagtcg |
25285756 |
T |
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| Q |
307 |
aaactcaaaatgagggatatcgacataaacaca |
339 |
Q |
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| T |
25285757 |
aaactcaaaatgagggatatcgacataaacaca |
25285789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 339 - 487
Target Start/End: Original strand, 25286100 - 25286248
Alignment:
| Q |
339 |
agttttactgacatgccttatatgtgataagaatttccacttgaaatcacatttagaacaaataacaacaatgcaacttaatagaatcaaagttgccact |
438 |
Q |
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| T |
25286100 |
agttatactgacatgccttatatgtgataagaatttccacttgaaatcacagttagaacaaataacaacaatgcaactgaatagagtcaaagttgccact |
25286199 |
T |
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| Q |
439 |
tattcaaccttattgaattgacttgtaagaaacgtttagttgtgaaaat |
487 |
Q |
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| T |
25286200 |
tattcaaccttatagaattgacttgtaagaaacgtttagttgtgaaaat |
25286248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 482 - 598
Target Start/End: Original strand, 25286527 - 25286644
Alignment:
| Q |
482 |
gaaaatttaacttctttcaaatgtttcataagactaatcaatggcttttcattgcgatctaattaaggcatataaataaaaagtcatgttgattttcat- |
580 |
Q |
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| T |
25286527 |
gaaaatttaacttctttcaaatgtttcataagactaatcaatggcttttcattgtgatctaattaaggcatataaacaaaaagtcatgttgattttcata |
25286626 |
T |
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| Q |
581 |
aaactattttgtagaaag |
598 |
Q |
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| T |
25286627 |
aaactattttgtagaaag |
25286644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 418 - 598
Target Start/End: Original strand, 15737112 - 15737292
Alignment:
| Q |
418 |
aatagaatcaaagttgccacttattcaaccttattgaattgacttgtaagaaacgtttagttgtgaaaatttaacttctttcaaatgtttcataagacta |
517 |
Q |
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|||||| ||||||||||| |||||||||| |||| ||||||||||||||||||| |||||||| || ||||||| || |||||||||||||||||||||| |
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| T |
15737112 |
aatagattcaaagttgcctcttattcaacgttatagaattgacttgtaagaaacttttagttgcgacaatttaatttatttcaaatgtttcataagacta |
15737211 |
T |
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| Q |
518 |
atcaatggcttttcattgcgatctaattaaggcatataaataaaaagtcatgttgattttcataaactattttgtagaaag |
598 |
Q |
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|| | |||||| || ||| ||||| ||||||||||||||| |||||| |||||||||||||||||| |||||||| ||||| |
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| T |
15737212 |
attagtggcttctccttgtgatctgattaaggcatataaacaaaaagccatgttgattttcataaagtattttgtcgaaag |
15737292 |
T |
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