View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16727_low_7 (Length: 605)
Name: NF16727_low_7
Description: NF16727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16727_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 21 - 598
Target Start/End: Original strand, 8431506 - 8432083
Alignment:
| Q |
21 |
ggagaaagataaacaaagtaagctaaggaacaagttcatgaaagcaatcacaataacatttcaaaacgctcctttcagtccaggaagagatcacaaattt |
120 |
Q |
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| T |
8431506 |
ggagaaagataaacaaagtaagctaaggaacaagttcatgaaagcaatcacaataacatttcaaaacgctcctttcagtccaggaagagatcacaaattt |
8431605 |
T |
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| Q |
121 |
agatcagaaaatagtaatacaaagtggggtgcaaaaactcatgctgttggtaagggtttttctggacctatggttactatgattccatatgaagctagaa |
220 |
Q |
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| T |
8431606 |
agatcagaaaatagtaatacaaagtggggtgcaaaaactcatgctgttggtaagggtttttctggacctatggttactatgattccatatgaagctagaa |
8431705 |
T |
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| Q |
221 |
gaaaacctaaagatggtggtggcaatgaaactcaagaacccacttcaccaaagatttcttgtatgggacagatcaagcatcacaggaagaaaaatattcc |
320 |
Q |
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| T |
8431706 |
gaaaacctaaagatggtggtggcaatgaaactcaagaacccacttcaccaaagatttcttgtatgggacagatcaagcatcacaagaagaaaaatattcc |
8431805 |
T |
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| Q |
321 |
aaaacccaacaaagatctcttcactccaaaggtggatactgaggtaaagagatccaagtttcagaggattttttcgcagaggtctaaagcaaaatttgcg |
420 |
Q |
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| T |
8431806 |
aaaacccaacaaagatctcttcactccaaaggtggatactgaggtaaagagatccaagtttcagaggattttttcgcagaggtctaaagcaaaatttgcg |
8431905 |
T |
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| Q |
421 |
gagaggaaatcagatggttctggatttgttgatgaagggaacaacaaagcaccgcctatgggtgatatgaggagatttgcaagtggacgtgaggcttttt |
520 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8431906 |
gaaaggaaatcagatggttctggatttgttgatgaagggaacaacaaagcaccgcctatgggtgatatgaggagatttgcaagtggacgtgaggcttttt |
8432005 |
T |
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| Q |
521 |
ctaaatttgattggaaggcagtgattgagcctgaagaaattgatcaaagggaatgttttactgatggagatgatgatg |
598 |
Q |
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| T |
8432006 |
ctaaatttgattggaaggcagtgattgagcctgaagaaattgatcaaagggaatgttttactgatggagaggatgatg |
8432083 |
T |
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